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Snhg20 small nucleolar RNA host gene 20 [ Mus musculus (house mouse) ]

Gene ID: 76972, updated on 26-Sep-2022

Summary

Official Symbol
Snhg20provided by MGI
Official Full Name
small nucleolar RNA host gene 20provided by MGI
Primary source
MGI:MGI:1924222
See related
Ensembl:ENSMUSG00000086859 AllianceGenome:MGI:1924222
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2810008D09Rik
Summary
Orthologous to human SNHG20 (small nucleolar RNA host gene 20). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in bladder adult (RPKM 42.7), limb E14.5 (RPKM 37.9) and 28 other tissues See more
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Genomic context

See Snhg20 in Genome Data Viewer
Location:
11; 11 E2
Exon count:
2
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (116967609..116969781)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (117076783..117078955)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene mannoside acetylglucosaminyltransferase 5, isoenzyme B Neighboring gene predicted gene, 33829 Neighboring gene predicted gene 11728 Neighboring gene microRNA 6516 Neighboring gene SEC14-like lipid binding 1 Neighboring gene 60S ribosomal protein L12 pseudogene Neighboring gene septin 9 Neighboring gene predicted gene, 39478

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027059.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL627205, BC037520
    Related
    ENSMUST00000149822.4

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    116967609..116969781
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)