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2610028H24Rik RIKEN cDNA 2610028H24 gene [ Mus musculus (house mouse) ]

Gene ID: 76964, updated on 5-Mar-2024

Summary

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Official Symbol
2610028H24Rikprovided by MGI
Official Full Name
RIKEN cDNA 2610028H24 geneprovided by MGI
Primary source
MGI:MGI:1924214
See related
Ensembl:ENSMUSG00000009114 AllianceGenome:MGI:1924214
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
ORF67
Summary
Is expressed in several structures, including eye; genitourinary system; heart; lung; and thymus. Orthologous to human C21orf58 (chromosome 21 open reading frame 58). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in lung adult (RPKM 15.2), ovary adult (RPKM 8.7) and 1 other tissue See more
Orthologs
human all
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Genomic context

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Location:
10 C1; 10 38.84 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (76284883..76297052)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (76449049..76461218)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene pericentrin (kendrin) Neighboring gene RIKEN cDNA 1700094J05 gene Neighboring gene STARR-seq mESC enhancer starr_27178 Neighboring gene STARR-seq mESC enhancer starr_27179 Neighboring gene STARR-seq mESC enhancer starr_27180 Neighboring gene STARR-seq mESC enhancer starr_27181 Neighboring gene predicted gene 9744 Neighboring gene STARR-seq mESC enhancer starr_27182 Neighboring gene ybeY metallopeptidase Neighboring gene minichromosome maintenance complex component 3 associated protein Neighboring gene STARR-positive B cell enhancer ABC_E6874 Neighboring gene RIKEN cDNA 4930483K19 gene Neighboring gene lanosterol synthase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A mutation in the pericentrin gene causes abnormal interneuron migration to the olfactory bulb in mice. Endoh-Yamagami S, et al. Dev Biol, 2010 Apr 1. PMID 20096683
  2. Human chromosome 21 gene expression atlas in the mouse. Reymond A, et al. Nature, 2002 Dec 5. PMID 12466854
  3. Assembly, verification, and initial annotation of the NIA mouse 7.4K cDNA clone set. VanBuren V, et al. Genome Res, 2002 Dec. PMID 12466305, Free PMC Article
  4. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
  5. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C21orf58 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_029816.2 → NP_084092.2  uncharacterized protein C21orf58 homolog

    See identical proteins and their annotated locations for NP_084092.2

    Status: VALIDATED

    Source sequence(s)
    AK161552, BC051454, BQ552827, BQ714071
    Consensus CDS
    CCDS35945.1
    UniProtKB/TrEMBL
    G5E8K1, Q80X27
    Related
    ENSMUSP00000090061.6, ENSMUST00000092406.12
    Conserved Domains (1) summary
    pfam15248
    Location:145 → 210
    DUF4587; Domain of unknown function (DUF4587)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    76284883..76297052
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006514295.4 → XP_006514358.1  uncharacterized protein C21orf58 homolog isoform X1

    See identical proteins and their annotated locations for XP_006514358.1

    UniProtKB/TrEMBL
    G5E8K1, Q80X27
    Conserved Domains (1) summary
    pfam15248
    Location:145 → 210
    DUF4587; Domain of unknown function (DUF4587)

  2. XM_006514297.4 → XP_006514360.1  uncharacterized protein C21orf58 homolog isoform X2

    UniProtKB/TrEMBL
    E9Q7R5, Q3TT67
    Related
    ENSMUSP00000101055.2, ENSMUST00000105415.3
    Conserved Domains (1) summary
    pfam15248
    Location:124 → 189
    DUF4587; Domain of unknown function (DUF4587)

  3. XM_036156086.1 → XP_036011979.1  uncharacterized protein C21orf58 homolog isoform X3

    UniProtKB/TrEMBL
    Q3TT67
    Conserved Domains (1) summary
    pfam15248
    Location:83 → 148
    DUF4587; Domain of unknown function (DUF4587)

  4. XM_006514298.3 → XP_006514361.1  uncharacterized protein C21orf58 homolog isoform X3

    See identical proteins and their annotated locations for XP_006514361.1

    UniProtKB/TrEMBL
    Q3TT67
    Conserved Domains (1) summary
    pfam15248
    Location:83 → 148
    DUF4587; Domain of unknown function (DUF4587)
Nucleotide Protein Strain
Heading Accession and Version

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