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hlfa HLF transcription factor, PAR bZIP family member a [ Danio rerio (zebrafish) ]

Gene ID: 768192, updated on 3-Oct-2019

Summary

Official Symbol
hlfaprovided by ZNC
Official Full Name
HLF transcription factor, PAR bZIP family member aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-061013-159
See related
Ensembl:ENSDARG00000074752
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
HLF1; zgc:153035

Genomic context

See hlfa in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (11586231..11624472, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (11619688..11657929, complement)
103 previous assembly Zv9 (GCF_000002035.4) 3 NC_007114.5 (11837990..11876260, complement)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103910211 Neighboring gene monocyte to macrophage differentiation-associated Neighboring gene dynein heavy chain-like Neighboring gene si:ch211-262e15.1

Genomic regions, transcripts, and products

General gene information

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
RNA polymerase II regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
hepatic leukemia factor
Names
hepatic leukemia factor 1
hepatic leukemia factor a
zhlf1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001077334.2NP_001070802.1  hepatic leukemia factor

    See identical proteins and their annotated locations for NP_001070802.1

    Status: PROVISIONAL

    Source sequence(s)
    BC124624
    UniProtKB/TrEMBL
    Q08BP9
    Related
    ENSDARP00000106703.1, ENSDART00000127157.3
    Conserved Domains (1) summary
    cd14695
    Location:223282
    bZIP_HLF; Basic leucine zipper (bZIP) domain of Hepatic leukemia factor (HLF) and similar proteins: a DNA-binding and dimerization domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    11586231..11624472 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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