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Armc6 armadillo repeat containing 6 [ Mus musculus (house mouse) ]

Gene ID: 76813, updated on 8-Jan-2023

Summary

Official Symbol
Armc6provided by MGI
Official Full Name
armadillo repeat containing 6provided by MGI
Primary source
MGI:MGI:1924063
See related
Ensembl:ENSMUSG00000002343 AllianceGenome:MGI:1924063
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2410153K17Rik
Summary
Acts upstream of or within hematopoietic progenitor cell differentiation. Predicted to be located in cytosol. Orthologous to human ARMC6 (armadillo repeat containing 6). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E18 (RPKM 25.6), whole brain E14.5 (RPKM 18.6) and 28 other tissues See more
Orthologs
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Genomic context

See Armc6 in Genome Data Viewer
Location:
8; 8 B3.3
Exon count:
8
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (70672822..70687099, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (70220172..70234446, complement)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene transmembrane protein 161A Neighboring gene solute carrier family 25, member 42 Neighboring gene SURP and G patch domain containing 2 Neighboring gene predicted gene, 38427 Neighboring gene homer scaffolding protein 3 Neighboring gene DEAD box helicase 49

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (3) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC67564

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in hematopoietic progenitor cell differentiation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within hematopoietic progenitor cell differentiation IGI
Inferred from Genetic Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
armadillo repeat-containing protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_133972.2NP_598733.2  armadillo repeat-containing protein 6

    See identical proteins and their annotated locations for NP_598733.2

    Status: PROVISIONAL

    Source sequence(s)
    BC043070
    Consensus CDS
    CCDS40371.1
    UniProtKB/Swiss-Prot
    Q8BNU0, Q9CWE4
    Related
    ENSMUSP00000019679.6, ENSMUST00000019679.12
    Conserved Domains (2) summary
    smart00185
    Location:184226
    ARM; Armadillo/beta-catenin-like repeats
    sd00043
    Location:146180
    ARM; armadillo repeat [structural motif]

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    70672822..70687099 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011242332.4XP_011240634.1  armadillo repeat-containing protein 6 isoform X1

    See identical proteins and their annotated locations for XP_011240634.1

    Conserved Domains (2) summary
    smart00185
    Location:184226
    ARM; Armadillo/beta-catenin-like repeats
    sd00043
    Location:146180
    ARM; armadillo repeat [structural motif]
  2. XM_030243842.1XP_030099702.1  armadillo repeat-containing protein 6 isoform X2

    UniProtKB/Swiss-Prot
    Q9CWE4
    Conserved Domains (2) summary
    smart00185
    Location:184226
    ARM; Armadillo/beta-catenin-like repeats
    sd00043
    Location:146180
    ARM; armadillo repeat [structural motif]
  3. XM_030243841.2XP_030099701.1  armadillo repeat-containing protein 6 isoform X2

    UniProtKB/Swiss-Prot
    Q9CWE4
    Conserved Domains (2) summary
    smart00185
    Location:184226
    ARM; Armadillo/beta-catenin-like repeats
    sd00043
    Location:146180
    ARM; armadillo repeat [structural motif]
  4. XM_011242333.4XP_011240635.1  armadillo repeat-containing protein 6 isoform X1

    See identical proteins and their annotated locations for XP_011240635.1

    Conserved Domains (2) summary
    smart00185
    Location:184226
    ARM; Armadillo/beta-catenin-like repeats
    sd00043
    Location:146180
    ARM; armadillo repeat [structural motif]
  5. XM_011242334.3XP_011240636.1  armadillo repeat-containing protein 6 isoform X1

    See identical proteins and their annotated locations for XP_011240636.1

    Conserved Domains (2) summary
    smart00185
    Location:184226
    ARM; Armadillo/beta-catenin-like repeats
    sd00043
    Location:146180
    ARM; armadillo repeat [structural motif]