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HAR1A highly accelerated region 1A [ Homo sapiens (human) ]

Gene ID: 768096, updated on 4-Mar-2025
Official Symbol
HAR1Aprovided by HGNC
Official Full Name
highly accelerated region 1Aprovided by HGNC
Primary source
HGNC:HGNC:33117
See related
MIM:610556; AllianceGenome:HGNC:33117
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HAR1F; LINC00064; NCRNA00064
Expression
Broad expression in brain (RPKM 1.1), testis (RPKM 0.4) and 21 other tissues See more
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See HAR1A in Genome Data Viewer
Location:
20q13.33
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (63101292..63104386)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (64903342..64907432)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (61732644..61735738)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1056 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:61687794-61687994 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61690954-61691796 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61691797-61692638 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:61699516-61700022 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61700597-61701098 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61701099-61701598 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18224 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13145 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61704121-61704620 Neighboring gene long intergenic non-protein coding RNA 1749 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13146 Neighboring gene highly accelerated region 1B Neighboring gene uncharacterized LOC105372719 Neighboring gene MPRA-validated peak4307 silencer Neighboring gene ReSE screen-validated silencer GRCh37_chr20:61751164-61751347 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61753175-61753676 Neighboring gene uncharacterized LOC105376996

  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Other Names

  • highly accelerated region 1A (non-protein coding)
  • highly accelerated region 1A (non-protein-coding RNA)
  • human accelerated region 1, forward
  • long intergenic non-protein coding RNA 64

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003244.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC047717, DQ860409

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    63101292..63104386
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    64903342..64907432
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)