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runx1t1 runt-related transcription factor 1; translocated to, 1 (cyclin D-related) [ Danio rerio (zebrafish) ]

Gene ID: 767809, updated on 10-Feb-2017
Official Symbol
runx1t1provided by ZNC
Official Full Name
runt-related transcription factor 1; translocated to, 1 (cyclin D-related)provided by ZNC
Primary source
ZFIN:ZDB-GENE-060929-164
See related
Ensembl:ENSDARG00000003680 Vega:OTTDARG00000014847
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
MTG8; wu:fi14b07; zgc:154044; si:ch211-232j17.1
Orthologs
Location:
chromosome: 19
Exon count:
12
Annotation release Status Assembly Chr Location
105 current GRCz10 (GCF_000002035.5) 19 NC_007130.6 (34114353..34199584)
103 previous assembly Zv9 (GCF_000002035.4) 19 NC_007130.5 (35116892..35147503)

Chromosome 19 - NC_007130.6Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108180105 Neighboring gene uncharacterized LOC108180114 Neighboring gene si:ch73-302o18.2 Neighboring gene OTU domain containing 6B

Markers

Homology

Clone Names

  • MGC154044

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 
transcription factor activity, sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
negative regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001076776.4NP_001070244.2  protein CBFA2T1

    Status: VALIDATED

    Source sequence(s)
    CR735113, CR759910
    UniProtKB/TrEMBL
    Q1L8K2
    Related
    ENSDARP00000123046, OTTDARP00000015010, ENSDART00000147226, OTTDART00000017752
    Conserved Domains (4) summary
    pfam01753
    Location:497533
    zf-MYND; MYND finger
    pfam07531
    Location:102188
    TAFH; NHR1 homology to TAF
    pfam08788
    Location:319385
    NHR2; NHR2 domain like
    cl23750
    Location:423479
    vATP-synt_E; ATP synthase (E/31 kDa) subunit

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz10 Primary Assembly

Genomic

  1. NC_007130.6 Reference GRCz10 Primary Assembly

    Range
    34114353..34199584
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017352274.1XP_017207763.1  protein CBFA2T1 isoform X1

    UniProtKB/TrEMBL
    A0A0R4IXV4
    Related
    ENSDARP00000139489, ENSDART00000162517
  2. XM_017352275.1XP_017207764.1  protein CBFA2T1 isoform X2

  3. XM_017352276.1XP_017207765.1  protein CBFA2T1 isoform X3

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