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rps16 ribosomal protein S16 [ Danio rerio (zebrafish) ]

Gene ID: 767765, updated on 25-Aug-2020

Summary

Official Symbol
rps16provided by ZNC
Official Full Name
ribosomal protein S16provided by ZNC
Primary source
ZFIN:ZDB-GENE-050506-107
See related
Ensembl:ENSDARG00000045487
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
im:690655; im:6906552; zgc:153404; si:dkey-66d18.1
Orthologs

Genomic context

See rps16 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (21649010..21652631, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (21928035..21931656, complement)
103 previous assembly Zv9 (GCF_000002035.4) 4 NC_007115.5 (20584700..20588321, complement)

Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1, regulatory subunit 12A Neighboring gene uncharacterized LOC103910453 Neighboring gene uncharacterized LOC108183408 Neighboring gene myogenic factor 6

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Homology

Clone Names

  • MGC153404

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
translation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytosolic small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ribosome IEA
Inferred from Electronic Annotation
more info
 
small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001076732.2NP_001070200.1  40S ribosomal protein S16

    See identical proteins and their annotated locations for NP_001070200.1

    Status: PROVISIONAL

    Source sequence(s)
    BC122271
    UniProtKB/TrEMBL
    Q1LWH1
    Related
    ENSDARP00000066897.4, ENSDART00000066898.5
    Conserved Domains (1) summary
    PLN00210
    Location:6146
    PLN00210; 40S ribosomal protein S16; Provisional

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007115.7 Reference GRCz11 Primary Assembly

    Range
    21649010..21652631 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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