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TRIM9 tripartite motif containing 9 [ Bos taurus (cattle) ]

Gene ID: 767615, updated on 8-Aug-2018

Summary

Official Symbol
TRIM9provided by VGNC
Official Full Name
tripartite motif containing 9provided by VGNC
Primary source
VGNC:VGNC:36353
See related
Ensembl:ENSBTAG00000010103
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs

Genomic context

See TRIM9 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
14
Annotation release Status Assembly Chr Location
106 current ARS-UCD1.2 (GCF_002263795.1) 10 NC_037337.1 (43825811..43944769, complement)
105 previous assembly Bos_taurus_UMD_3.1.1 (GCF_000003055.6) 10 AC_000167.1 (43870003..43988973, complement)

Chromosome 10 - NC_037337.1Genomic Context describing neighboring genes Neighboring gene ninein Neighboring gene abhydrolase domain containing 12B Neighboring gene protein SPT2 homolog Neighboring gene glycogen phosphorylase L Neighboring gene GTP-binding protein Rheb-like pseudogene Neighboring gene cleavage and polyadenylation specificity factor subunit 7 pseudogene Neighboring gene thioredoxin related transmembrane protein 1

Genomic regions, transcripts, and products

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
ubiquitin-protein transferase activity ISS
Inferred from Sequence or Structural Similarity
more info
 
zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
negative regulation of SNARE complex assembly IEA
Inferred from Electronic Annotation
more info
 
proteasome-mediated ubiquitin-dependent protein catabolic process ISS
Inferred from Sequence or Structural Similarity
more info
 
protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cell junction IEA
Inferred from Electronic Annotation
more info
 
cytoplasm ISS
Inferred from Sequence or Structural Similarity
more info
 
cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
dendrite ISS
Inferred from Sequence or Structural Similarity
more info
 
synaptic vesicle IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
E3 ubiquitin-protein ligase TRIM9
Names
RING-type E3 ubiquitin transferase TRIM9
tripartite motif-containing protein 9
NP_001070005.1
XP_005211783.1
XP_005211785.1
XP_005211786.1
XP_010807586.1
XP_024853640.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001076537.2NP_001070005.1  E3 ubiquitin-protein ligase TRIM9

    See identical proteins and their annotated locations for NP_001070005.1

    Status: PROVISIONAL

    Source sequence(s)
    BC114071
    UniProtKB/Swiss-Prot
    Q29RQ5
    Related
    ENSBTAP00000013346.5, ENSBTAT00000013346.5
    Conserved Domains (5) summary
    smart00502
    Location:273399
    BBC; B-Box C-terminal domain
    smart00336
    Location:224266
    BBOX; B-Box-type zinc finger
    smart00184
    Location:1038
    RING; Ring finger
    cd00063
    Location:453532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:529700
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67

RefSeqs of Annotated Genomes: Bos taurus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD1.2 Primary Assembly

Genomic

  1. NC_037337.1 Reference ARS-UCD1.2 Primary Assembly

    Range
    43825811..43944769 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005211728.4XP_005211785.1  E3 ubiquitin-protein ligase TRIM9 isoform X3

    See identical proteins and their annotated locations for XP_005211785.1

    Conserved Domains (5) summary
    smart00502
    Location:273399
    BBC; B-Box C-terminal domain
    smart00336
    Location:224266
    BBOX; B-Box-type zinc finger
    smart00184
    Location:1038
    RING; Ring finger
    cd00063
    Location:449528
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:525696
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
  2. XM_005211726.4XP_005211783.1  E3 ubiquitin-protein ligase TRIM9 isoform X2

    Related
    ENSBTAP00000042592.3
    Conserved Domains (5) summary
    smart00502
    Location:273399
    BBC; B-Box C-terminal domain
    smart00336
    Location:224266
    BBOX; B-Box-type zinc finger
    cd00063
    Location:453532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:620767
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:552
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
  3. XM_010809284.3XP_010807586.1  E3 ubiquitin-protein ligase TRIM9 isoform X1

    Conserved Domains (5) summary
    smart00502
    Location:273399
    BBC; B-Box C-terminal domain
    smart00336
    Location:224266
    BBOX; B-Box-type zinc finger
    cd00063
    Location:453532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:620785
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:552
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
  4. XM_024997872.1XP_024853640.1  E3 ubiquitin-protein ligase TRIM9 isoform X4

    Conserved Domains (4) summary
    smart00502
    Location:273399
    BBC; B-Box C-terminal domain
    smart00336
    Location:224266
    BBOX; B-Box-type zinc finger
    cd00063
    Location:453532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl17238
    Location:552
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
  5. XM_005211729.4XP_005211786.1  E3 ubiquitin-protein ligase TRIM9 isoform X4

    See identical proteins and their annotated locations for XP_005211786.1

    Conserved Domains (4) summary
    smart00502
    Location:273399
    BBC; B-Box C-terminal domain
    smart00336
    Location:224266
    BBOX; B-Box-type zinc finger
    cd00063
    Location:453532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl17238
    Location:552
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
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