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Fam209 family with sequence similarity 209 [ Mus musculus (house mouse) ]

Gene ID: 76426, updated on 4-Dec-2022

Summary

Official Symbol
Fam209provided by MGI
Official Full Name
family with sequence similarity 209provided by MGI
Primary source
MGI:MGI:1923676
See related
Ensembl:ENSMUSG00000027505 AllianceGenome:MGI:1923676
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700029J11Rik
Summary
Is expressed in testis. Orthologous to several human genes including FAM209A (family with sequence similarity 209 member A). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 140.4) See more
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Genomic context

See Fam209 in Genome Data Viewer
Location:
2; 2 H3
Exon count:
2
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (172314474..172316236)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (172472554..172474316)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene Cas scaffolding protein family member 4 Neighboring gene uncharacterized LOC118568483 Neighboring gene replication termination factor 2 Neighboring gene glucosaminyl (N-acetyl) transferase family member 7 Neighboring gene predicted gene, 40009 Neighboring gene ribosomal protein S29 pseudogene Neighboring gene predicted gene, 35864

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 
  • Endonuclease-mediated (4)  1 citation

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in acrosome assembly IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within cell differentiation IEA
Inferred from Electronic Annotation
more info
 
involved_in spermatid development IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within spermatogenesis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in nuclear inner membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
protein FAM209
Names
likely orthologue of H. sapiens chromosome 20 open reading frame 106 (C20orf106)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_029608.1NP_083884.1  protein FAM209 precursor

    See identical proteins and their annotated locations for NP_083884.1

    Status: PREDICTED

    Source sequence(s)
    BC137933
    Consensus CDS
    CCDS50809.1
    UniProtKB/Swiss-Prot
    Q9D9T2
    UniProtKB/TrEMBL
    A2APA5
    Related
    ENSMUSP00000029007.3, ENSMUST00000029007.3
    Conserved Domains (1) summary
    pfam15206
    Location:21167
    FAM209; FAM209 family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    172314474..172316236
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)