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ZNF80 zinc finger protein 80 [ Homo sapiens (human) ]

Gene ID: 7634, updated on 1-Aug-2020

Summary

Official Symbol
ZNF80provided by HGNC
Official Full Name
zinc finger protein 80provided by HGNC
Primary source
HGNC:HGNC:13155
See related
Ensembl:ENSG00000174255 MIM:194553
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
pT17
Expression
Biased expression in lymph node (RPKM 1.1), appendix (RPKM 0.6) and 7 other tissues See more
Orthologs

Genomic context

See ZNF80 in Genome Data Viewer
Location:
3q13.31
Exon count:
1
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (114234631..114237578, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (113953370..113956425, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986115 Neighboring gene ZNF80-LTR promoter Neighboring gene dopamine receptor D3 Neighboring gene family with sequence similarity 214 member B pseudogene Neighboring gene ZBTB20 antisense RNA 1 Neighboring gene T cell immunoreceptor with Ig and ITIM domains Neighboring gene zinc finger and BTB domain containing 20 Neighboring gene microRNA 568

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
DNA-binding transcription factor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
zinc finger protein 80
Names
ZNFPT17

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_007136.4NP_009067.2  zinc finger protein 80

    See identical proteins and their annotated locations for NP_009067.2

    Status: VALIDATED

    Source sequence(s)
    AC093010
    Consensus CDS
    CCDS2979.1
    UniProtKB/Swiss-Prot
    P51504
    Related
    ENSP00000417192.2, ENST00000482457.3
    Conserved Domains (3) summary
    COG5048
    Location:51227
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:107127
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:175200
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20200522

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

    Range
    114234631..114237578 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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