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ZNF79 zinc finger protein 79 [ Homo sapiens (human) ]

Gene ID: 7633, updated on 12-Mar-2017
Official Symbol
ZNF79provided by HGNC
Official Full Name
zinc finger protein 79provided by HGNC
Primary source
HGNC:HGNC:13153
See related
Ensembl:ENSG00000196152 MIM:194552; Vega:OTTHUMG00000020703
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
pT7
Orthologs
Location:
9q33.3
Exon count:
6
Annotation release Status Assembly Chr Location
108 current GRCh38.p7 (GCF_000001405.33) 9 NC_000009.12 (127424374..127446289)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (130186653..130209525)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene GTPase activating Rap/RanGAP domain like 3 Neighboring gene uncharacterized LOC107987131 Neighboring gene solute carrier family 2 member 8 Neighboring gene small nucleolar RNA, H/ACA box 65 Neighboring gene ribosomal protein L12 Neighboring gene leucine rich repeat and sterile alpha motif containing 1

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Jun 15 11:32:44 2016
  • Gene Expression, organism-specific biosystem (from REACTOME)
    Gene Expression, organism-specific biosystemGene Expression covers the pathways by which genomic DNA is transcribed to yield RNA, the regulation of these transcription processes, and the pathways by which newly-made RNA Transcripts are process...
  • Generic Transcription Pathway, organism-specific biosystem (from REACTOME)
    Generic Transcription Pathway, organism-specific biosystemOVERVIEW OF TRANSCRIPTION REGULATION: Detailed studies of gene transcription regulation in a wide variety of eukaryotic systems has revealed the general principles and mechanisms by which cell- or t...
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
molecular_function ND
No biological Data available
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
zinc finger protein 79
Names
ZNFpT7

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001286696.1NP_001273625.1  zinc finger protein 79 isoform b

    See identical proteins and their annotated locations for NP_001273625.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site in the 5' terminal exon, and it thus differs in its 5' UTR and initiates translation from a downstream in-frame start codon, compared to variant 1. The encoded isoform (b) is shorter at the N-terminus, compared to isoform a. Both variants 2 and 3 encode isoform b.
    Source sequence(s)
    AI301044, AK302284, AK316233, DA001397, DC378814
    Consensus CDS
    CCDS69664.1
    UniProtKB/TrEMBL
    B4DY65, B7ZAB8, F5H032
    Related
    ENSP00000478201, ENST00000612342
    Conserved Domains (5) summary
    cd07765
    Location:1653
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    smart00349
    Location:1674
    KRAB; krueppel associated box
    COG5048
    Location:182413
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:171191
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:295320
    zf-H2C2_2; Zinc-finger double domain
  2. NM_001286697.1NP_001273626.1  zinc finger protein 79 isoform b

    See identical proteins and their annotated locations for NP_001273626.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) includes an additional exon in the 5' region, and it thus differs in its 5' UTR and initiates translation from a downstream in-frame start codon, compared to variant 1. The encoded isoform (b) is shorter at the N-terminus, compared to isoform a. Both variants 2 and 3 encode isoform b.
    Source sequence(s)
    AI301044, AK302284, AK316233, DA001397, DC378814
    Consensus CDS
    CCDS69664.1
    UniProtKB/TrEMBL
    B4DY65, B7ZAB8, F5H032
    Related
    ENSP00000438418, ENST00000543471
    Conserved Domains (5) summary
    cd07765
    Location:1653
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    smart00349
    Location:1674
    KRAB; krueppel associated box
    COG5048
    Location:182413
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:171191
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:295320
    zf-H2C2_2; Zinc-finger double domain
  3. NM_001286698.1NP_001273627.1  zinc finger protein 79 isoform c

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) uses an alternate splice site in the 5' terminal exon and lacks two alternate exons in the 5' region, and it thus differs in its 5' UTR and initiates translation from a downstream in-frame start codon, compared to variant 1. The encoded isoform (c) is shorter at the N-terminus, compared to isoform a.
    Source sequence(s)
    AI301044, AK302284, AK316233, BP248437, DA001397, DC378814
    Consensus CDS
    CCDS75904.1
    UniProtKB/TrEMBL
    A0A087X2B0, B4DY65, B7ZAB8
    Related
    ENSP00000484833, ENST00000617266
    Conserved Domains (3) summary
    COG5048
    Location:72303
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:6181
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:185210
    zf-H2C2_2; Zinc-finger double domain
  4. NM_001322260.1NP_001309189.1  zinc finger protein 79 isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5), along with variants 2 and 3, encodes isoform b.
    Source sequence(s)
    AL445222
    Consensus CDS
    CCDS69664.1
    UniProtKB/TrEMBL
    F5H032
    Conserved Domains (5) summary
    cd07765
    Location:1653
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    smart00349
    Location:1674
    KRAB; krueppel associated box
    COG5048
    Location:182413
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:171191
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:295320
    zf-H2C2_2; Zinc-finger double domain
  5. NM_007135.2NP_009066.2  zinc finger protein 79 isoform a

    See identical proteins and their annotated locations for NP_009066.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longest isoform (a).
    Source sequence(s)
    AI301044, AK054606, BC062309, BP351823, DC378814
    Consensus CDS
    CCDS6871.1
    UniProtKB/Swiss-Prot
    Q15937
    Related
    ENSP00000362446, OTTHUMP00000022185, ENST00000342483, OTTHUMT00000054188
    Conserved Domains (5) summary
    cd07765
    Location:4077
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    smart00349
    Location:4098
    KRAB; krueppel associated box
    COG5048
    Location:206437
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:195215
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:319344
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p7 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p7 Primary Assembly

    Range
    127424374..127446289
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006717279.3XP_006717342.1  zinc finger protein 79 isoform X1

    See identical proteins and their annotated locations for XP_006717342.1

    UniProtKB/TrEMBL
    F5H032
    Conserved Domains (5) summary
    cd07765
    Location:1653
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    smart00349
    Location:1674
    KRAB; krueppel associated box
    COG5048
    Location:182413
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:171191
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:295320
    zf-H2C2_2; Zinc-finger double domain

Alternate CHM1_1.1

Genomic

  1. NC_018920.2 Alternate CHM1_1.1

    Range
    130337099..130358946
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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