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0610040J01Rik RIKEN cDNA 0610040J01 gene [ Mus musculus (house mouse) ]

Gene ID: 76261, updated on 15-Mar-2023

Summary

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Official Symbol
0610040J01Rikprovided by MGI
Official Full Name
RIKEN cDNA 0610040J01 geneprovided by MGI
Primary source
MGI:MGI:1923511
See related
Ensembl:ENSMUSG00000060512 AllianceGenome:MGI:1923511
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to be located in cell junction and nucleoplasm. Is expressed in alimentary system; brain ventricular layer; respiratory system; telencephalon; and urinary system. Orthologous to human C4orf19 (chromosome 4 open reading frame 19). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in colon adult (RPKM 18.6), stomach adult (RPKM 15.9) and 17 other tissues See more
Orthologs
human all
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Genomic context

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See 0610040J01Rik in Genome Data Viewer
Location:
5; 5 C3.1
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (63969834..64056968)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (63811657..63899626)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 30837 Neighboring gene NACHT and WD repeat domain containing 2 Neighboring gene hematological and neurological expressed 1 protein pseudogene Neighboring gene RELT-like 1 Neighboring gene RIKEN cDNA 5830416I19 gene Neighboring gene predicted gene, 25608

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The protomap is propagated to cortical plate neurons through an Eomes-dependent intermediate map. Elsen GE, et al. Proc Natl Acad Sci U S A, 2013 Mar 5. PMID 23431145, Free PMC Article
  2. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
  3. GUDMAP: the genitourinary developmental molecular anatomy project. McMahon AP, et al. J Am Soc Nephrol, 2008 Apr. PMID 18287559
  4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

See all (13) citations in PubMed

See citations in PubMed for homologs of this gene provided by HomoloGene

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C4orf19 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001417897.1 → NP_001404826.1  uncharacterized protein C4orf19 homolog

    Status: VALIDATED

    Source sequence(s)
    AC114408, AC158789

  2. NM_001417898.1 → NP_001404827.1  uncharacterized protein C4orf19 homolog

    Status: VALIDATED

    Source sequence(s)
    AC114408, AC158789

  3. NM_001417899.1 → NP_001404828.1  uncharacterized protein C4orf19 homolog

    Status: VALIDATED

    Source sequence(s)
    AC114408, AC158789

  4. NM_001417900.1 → NP_001404829.1  uncharacterized protein C4orf19 homolog

    Status: VALIDATED

    Source sequence(s)
    AC158789

  5. NM_029554.5 → NP_083830.3  uncharacterized protein C4orf19 homolog

    See identical proteins and their annotated locations for NP_083830.3

    Status: VALIDATED

    Source sequence(s)
    AC114408, AC158789
    Consensus CDS
    CCDS39092.1
    UniProtKB/Swiss-Prot
    Q99K99, Q9DCE0
    Related
    ENSMUSP00000080443.4, ENSMUST00000081747.8
    Conserved Domains (1) summary
    pfam15770
    Location:9 → 313
    DUF4699; Domain of unknown function (DUF4699)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    63969834..64056968
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011240792.4 → XP_011239094.1  uncharacterized protein C4orf19 homolog isoform X1

    UniProtKB/Swiss-Prot
    Q99K99, Q9DCE0
    Conserved Domains (1) summary
    pfam15770
    Location:9 → 313
    DUF4699; Domain of unknown function (DUF4699)

  2. XM_006504178.5 → XP_006504241.1  uncharacterized protein C4orf19 homolog isoform X1

    UniProtKB/Swiss-Prot
    Q99K99, Q9DCE0
    Conserved Domains (1) summary
    pfam15770
    Location:9 → 313
    DUF4699; Domain of unknown function (DUF4699)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q99K99.2 GenPept UniProtKB/Swiss-Prot:Q99K99

Gene LinkOut

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