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0610040J01Rik RIKEN cDNA 0610040J01 gene [ Mus musculus (house mouse) ]

Gene ID: 76261, updated on 17-May-2023

Summary

Official Symbol
0610040J01Rikprovided by MGI
Official Full Name
RIKEN cDNA 0610040J01 geneprovided by MGI
Primary source
MGI:MGI:1923511
See related
Ensembl:ENSMUSG00000060512 AllianceGenome:MGI:1923511
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to be located in cell junction and nucleoplasm. Is expressed in alimentary system; brain ventricular layer; respiratory system; telencephalon; and urinary system. Orthologous to human C4orf19 (chromosome 4 open reading frame 19). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in colon adult (RPKM 18.6), stomach adult (RPKM 15.9) and 17 other tissues See more
Orthologs
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Genomic context

See 0610040J01Rik in Genome Data Viewer
Location:
5; 5 C3.1
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_04 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (63969833..64056968)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (63811657..63899626)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 30837 Neighboring gene NACHT and WD repeat domain containing 2 Neighboring gene hematological and neurological expressed 1 protein pseudogene Neighboring gene RELT-like 1 Neighboring gene RIKEN cDNA 5830416I19 gene Neighboring gene predicted gene, 25608

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General protein information

Preferred Names
uncharacterized protein C4orf19 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001417897.1NP_001404826.1  uncharacterized protein C4orf19 homolog

    Status: VALIDATED

    Source sequence(s)
    AC114408, AC158789
    UniProtKB/Swiss-Prot
    Q9DCE0
  2. NM_001417898.1NP_001404827.1  uncharacterized protein C4orf19 homolog

    Status: VALIDATED

    Source sequence(s)
    AC114408, AC158789
    UniProtKB/Swiss-Prot
    Q9DCE0
  3. NM_001417899.1NP_001404828.1  uncharacterized protein C4orf19 homolog

    Status: VALIDATED

    Source sequence(s)
    AC114408, AC158789
    UniProtKB/Swiss-Prot
    Q9DCE0
  4. NM_001417900.1NP_001404829.1  uncharacterized protein C4orf19 homolog

    Status: VALIDATED

    Source sequence(s)
    AC158789
    UniProtKB/Swiss-Prot
    Q9DCE0
  5. NM_029554.5NP_083830.3  uncharacterized protein C4orf19 homolog

    See identical proteins and their annotated locations for NP_083830.3

    Status: VALIDATED

    Source sequence(s)
    AC114408, AC158789
    Consensus CDS
    CCDS39092.1
    UniProtKB/Swiss-Prot
    Q99K99, Q9DCE0
    Related
    ENSMUSP00000080443.4, ENSMUST00000081747.8
    Conserved Domains (1) summary
    pfam15770
    Location:9313
    DUF4699; Domain of unknown function (DUF4699)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    63969833..64056968
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)