U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

4930579G24Rik RIKEN cDNA 4930579G24 gene [ Mus musculus (house mouse) ]

Gene ID: 75939, updated on 5-Mar-2024

Summary

Official Symbol
4930579G24Rikprovided by MGI
Official Full Name
RIKEN cDNA 4930579G24 geneprovided by MGI
Primary source
MGI:MGI:1923189
See related
Ensembl:ENSMUSG00000027811 AllianceGenome:MGI:1923189
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to be located in cytoplasm. Orthologous to human C4orf46 (chromosome 4 open reading frame 46). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in testis adult (RPKM 10.6), liver E14 (RPKM 5.4) and 18 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See 4930579G24Rik in Genome Data Viewer
Location:
3 E3; 3 34.93 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (79536386..79540127)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (79629079..79632820)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930589L23 gene Neighboring gene STARR-seq mESC enhancer starr_08006 Neighboring gene peptidylprolyl isomerase D (cyclophilin D) Neighboring gene electron transferring flavoprotein, dehydrogenase Neighboring gene relaxin/insulin-like family peptide receptor 1 Neighboring gene STARR-seq mESC enhancer starr_08007 Neighboring gene VISTA enhancer mm1650 Neighboring gene STARR-seq mESC enhancer starr_08009 Neighboring gene transmembrane protein 144 Neighboring gene predicted gene, 26420

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
uncharacterized protein C4orf46 homolog

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_029482.1NP_083758.1  uncharacterized protein C4orf46 homolog

    See identical proteins and their annotated locations for NP_083758.1

    Status: VALIDATED

    Source sequence(s)
    BC052483, BY309631
    Consensus CDS
    CCDS50936.1
    UniProtKB/Swiss-Prot
    Q3UUX7, Q9D4P8
    Related
    ENSMUSP00000029388.9, ENSMUST00000029388.10
    Conserved Domains (1) summary
    pfam15725
    Location:3185
    DUF4676; Domain of unknown function (DUF4676)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    79536386..79540127
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)