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1700020A23Rik RIKEN cDNA 1700020A23 gene [ Mus musculus (house mouse) ]

Gene ID: 75656, updated on 25-Sep-2020

Summary

Official Symbol
1700020A23Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700020A23 geneprovided by MGI
Primary source
MGI:MGI:1922906
See related
Ensembl:ENSMUSG00000027409
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Restricted expression toward testis adult (RPKM 83.6) See more
Orthologs
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Genomic context

See 1700020A23Rik in Genome Data Viewer
Location:
2; 2 F1
Exon count:
3
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (130247179..130247994)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (130405259..130406074)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (130230995..130231810)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene ribosomal protein L27A pseudogene Neighboring gene uncharacterized LOC118568559 Neighboring gene carboxypeptidase X 1 (M14 family) Neighboring gene transmembrane 239 Neighboring gene PC-esterase domain containing 1A Neighboring gene VSP16 CORVET/HOPS core subunit

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein C20orf141 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001163483.1NP_001156955.1  uncharacterized protein C20orf141 homolog

    See identical proteins and their annotated locations for NP_001156955.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    BC049710
    Consensus CDS
    CCDS50710.1
    UniProtKB/TrEMBL
    Q9DA59
    Related
    ENSMUSP00000028898.3, ENSMUST00000028898.4
  2. NM_029375.1NP_083651.1  uncharacterized protein C20orf141 homolog

    See identical proteins and their annotated locations for NP_083651.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AK006141, BC049710, BX890605
    Consensus CDS
    CCDS50710.1
    UniProtKB/TrEMBL
    Q9DA59
    Related
    ENSMUSP00000105910.1, ENSMUST00000110281.1

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    130247179..130247994
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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