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1700013H16Rik RIKEN cDNA 1700013H16 gene [ Mus musculus (house mouse) ]

Gene ID: 75514, updated on 31-Jan-2019

Summary

Official Symbol
1700013H16Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700013H16 geneprovided by MGI
Primary source
MGI:MGI:1922764
See related
Ensembl:ENSMUSG00000054727
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Slx2; Xlr6
Expression
Restricted expression toward testis adult (RPKM 1.5) See more

Genomic context

See 1700013H16Rik in Genome Data Viewer
Location:
X; X A5
Exon count:
9
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) X NC_000086.7 (53742901..53757970, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) X NC_000086.6 (51046077..51061008, complement)

Chromosome X - NC_000086.7Genomic Context describing neighboring genes Neighboring gene expressed sequence AW822252 Neighboring gene RIKEN cDNA 4930502E18 gene Neighboring gene 60S ribosomal protein L38 pseudogene Neighboring gene 60S ribosomal protein L37 pseudogene Neighboring gene zinc finger protein 36, C3H type-like 3

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
meiotic cell cycle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
spermatid development IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
spermatogenesis IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
XY body IDA
Inferred from Direct Assay
more info
PubMed 
colocalizes_with chromatin IDA
Inferred from Direct Assay
more info
PubMed 
nucleolus IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
synaptonemal complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
synaptonemal complex protein 3-like
Names
SYCP3-like X-linked 2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001200013.1NP_001186942.1  synaptonemal complex protein 3-like

    See identical proteins and their annotated locations for NP_001186942.1

    Status: VALIDATED

    Source sequence(s)
    AK005953, AL691513
    Consensus CDS
    CCDS53071.1
    UniProtKB/TrEMBL
    Q9DAC5
    Related
    ENSMUSP00000063474.2, ENSMUST00000067940.2
    Conserved Domains (2) summary
    pfam04803
    Location:151270
    Cor1; Cor1/Xlr/Xmr conserved region
    pfam15724
    Location:469
    TMEM119; TMEM119 family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000086.7 Reference GRCm38.p4 C57BL/6J

    Range
    53742901..53757970 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006535361.3XP_006535424.1  synaptonemal complex protein 3-like isoform X1

    Conserved Domains (1) summary
    pfam04803
    Location:13132
    Cor1; Cor1/Xlr/Xmr conserved region
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