U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

slc9c1 solute carrier family 9 member C1 [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 754777, updated on 5-Sep-2025
Symbol
slc9c1
Full Name
solute carrier family 9 member C1
Primary source
EchinoBase:ECB-GENE-23096176
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
Also known as
NHE
Try the new Gene page
Try the new Transcripts and proteins table
See slc9c1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145603.1 (24899794..24931327, complement)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577441.1 (503895..529505)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003579391.1 (53453..53884, complement)

NW_022145603.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC588722 Neighboring gene uncharacterized LOC115925527 Neighboring gene uncharacterized LOC105443495 Neighboring gene secretion regulating guanine nucleotide exchange factor

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sodium:proton antiporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
sperm-specific sodium:proton exchanger; sperm-specific sodium proton exchanger
Names
Voltage-gated Na(+)/H(+) exchanger

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001098457.1 → NP_001091927.1  sperm-specific sodium:proton exchanger precursor

    See identical proteins and their annotated locations for NP_001091927.1

    Status: PROVISIONAL

    Source sequence(s)
    EF424083
    UniProtKB/Swiss-Prot
    A3RL54
    Conserved Domains (4) summary
    COG0025
    Location:78 → 499
    NhaP; NhaP-type Na+/H+ or K+/H+ antiporter [Inorganic ion transport and metabolism]
    COG0664
    Location:956 → 1174
    Crp; cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
    cd00038
    Location:966 → 1091
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
    pfam00520
    Location:726 → 792
    Ion_trans; Ion transport protein

RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145603.1 Reference Spur_5.0 Primary Assembly

    Range
    24899794..24931327 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030988788.1 → XP_030844648.1  sperm-specific sodium proton exchanger isoform X1

    UniProtKB/TrEMBL
    A0A7M7T0D5
    Conserved Domains (4) summary
    COG0025
    Location:78 → 499
    NhaP; NhaP-type Na+/H+ or K+/H+ antiporter [Inorganic ion transport and metabolism]
    COG0664
    Location:956 → 1058
    Crp; cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
    pfam00027
    Location:979 → 1024
    cNMP_binding; Cyclic nucleotide-binding domain
    pfam00520
    Location:677 → 792
    Ion_trans; Ion transport protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A3RL54.1 GenPept UniProtKB/Swiss-Prot:A3RL54

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials