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Cfap126 cilia and flagella associated protein 126 [ Mus musculus (house mouse) ]

Gene ID: 75472, updated on 17-Feb-2021

Summary

Official Symbol
Cfap126provided by MGI
Official Full Name
cilia and flagella associated protein 126provided by MGI
Primary source
MGI:MGI:1922722
See related
Ensembl:ENSMUSG00000026649
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Fl; Fla; Fltp; Flattop; AV282292; 1700009P17Rik
Expression
Biased expression in testis adult (RPKM 58.3), lung adult (RPKM 6.2) and 1 other tissue See more
Orthologs
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Genomic context

See Cfap126 in Genome Data Viewer
Location:
1; 1 H3
Exon count:
11
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (170941326..170954525)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (171113912..171126956)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (173051792..173057098)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene nuclear encoded tRNA glutamic acid 6 (anticodon CTC) Neighboring gene nuclear encoded tRNA valine 6 (anticodon CAC) Neighboring gene succinate dehydrogenase complex, subunit C, integral membrane protein Neighboring gene predicted gene, 46172 Neighboring gene myelin protein zero

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Homology

Clone Names

  • MGC74123

Gene Ontology Provided by MGI

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
cell projection organization IEA
Inferred from Electronic Annotation
more info
 
cilium organization IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cilium organization IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
apical plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
cell projection IEA
Inferred from Electronic Annotation
more info
 
ciliary basal body IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ciliary basal body IDA
Inferred from Direct Assay
more info
PubMed 
cilium IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
protein Flattop
Names
UPF0740 protein C1orf192 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001081275.2NP_001074744.1  protein Flattop

    See identical proteins and their annotated locations for NP_001074744.1

    Status: VALIDATED

    Source sequence(s)
    AC163497
    Consensus CDS
    CCDS35771.1
    UniProtKB/Swiss-Prot
    Q6P8X9
    Related
    ENSMUSP00000027959.4, ENSMUST00000027959.10
  2. NM_001379426.2NP_001366355.1  protein Flattop

    Status: VALIDATED

    Source sequence(s)
    AC163497
  3. NM_001379427.1NP_001366356.1  protein Flattop

    Status: VALIDATED

    Source sequence(s)
    AC163497
    Related
    ENSMUSP00000123188.2, ENSMUST00000151340.8

RNA

  1. NR_166655.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC163497
  2. NR_166656.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC163497

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    170941326..170954525
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011238879.4XP_011237181.1  protein Flattop isoform X3

    See identical proteins and their annotated locations for XP_011237181.1

  2. XM_036154106.1XP_036009999.1  protein Flattop isoform X2

  3. XM_011238880.3XP_011237182.1  protein Flattop isoform X3

    See identical proteins and their annotated locations for XP_011237182.1

  4. XM_006497020.2XP_006497083.1  protein Flattop isoform X1

    See identical proteins and their annotated locations for XP_006497083.1

    UniProtKB/Swiss-Prot
    Q6P8X9
  5. XM_017312596.1XP_017168085.1  protein Flattop isoform X1

    UniProtKB/Swiss-Prot
    Q6P8X9
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