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Stpg4 sperm tail PG rich repeat containing 4 [ Mus musculus (house mouse) ]

Gene ID: 75467, updated on 31-Jan-2019

Summary

Official Symbol
Stpg4provided by MGI
Official Full Name
sperm tail PG rich repeat containing 4provided by MGI
Primary source
MGI:MGI:1922717
See related
Ensembl:ENSMUSG00000036557
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
GSE; 1700011E24Rik
Expression
Restricted expression toward testis adult (RPKM 34.4) See more
Orthologs

Genomic context

See Stpg4 in Genome Data Viewer
Location:
17; 17 E4
Exon count:
13
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 17 NC_000083.6 (87389570..87428081, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (87788911..87827081, complement)

Chromosome 17 - NC_000083.6Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4833418N02 gene Neighboring gene predicted gene, 46586 Neighboring gene tetratricopeptide repeat domain 7 Neighboring gene uncharacterized LOC102632541 Neighboring gene calmodulin 2 Neighboring gene predicted gene, 30794

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
chromatin binding IDA
Inferred from Direct Assay
more info
PubMed 
histone binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
C-5 methylation of cytosine IMP
Inferred from Mutant Phenotype
more info
PubMed 
DNA demethylation of male pronucleus IMP
Inferred from Mutant Phenotype
more info
PubMed 
chromatin organization IEA
Inferred from Electronic Annotation
more info
 
multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
positive regulation of DNA demethylation IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
female pronucleus IDA
Inferred from Direct Assay
more info
PubMed 
germinal vesicle IDA
Inferred from Direct Assay
more info
PubMed 
male pronucleus IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
protein STPG4; uncharacterized protein C2orf61 homolog
Names
gonad-specific expression gene protein
sperm-tail PG-rich repeat-containing protein 4

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_029298.1NP_083574.1  protein STPG4

    See identical proteins and their annotated locations for NP_083574.1

    Status: VALIDATED

    Source sequence(s)
    AK005861, BE456690, BY096438
    Consensus CDS
    CCDS50206.1
    UniProtKB/Swiss-Prot
    Q9DAG5
    Related
    ENSMUSP00000044250.2, ENSMUST00000040609.8

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000083.6 Reference GRCm38.p4 C57BL/6J

    Range
    87389570..87428081 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006525072.3XP_006525135.1  uncharacterized protein C2orf61 homolog isoform X5

  2. XM_017317707.1XP_017173196.1  uncharacterized protein C2orf61 homolog isoform X3

  3. XM_006525071.3XP_006525134.1  uncharacterized protein C2orf61 homolog isoform X4

  4. XM_011246699.2XP_011245001.1  uncharacterized protein C2orf61 homolog isoform X6

  5. XM_006525070.2XP_006525133.1  uncharacterized protein C2orf61 homolog isoform X1

  6. XM_011246698.2XP_011245000.1  uncharacterized protein C2orf61 homolog isoform X2

RNA

  1. XR_001782126.1 RNA Sequence

  2. XR_385380.3 RNA Sequence

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