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Stpg4 sperm tail PG rich repeat containing 4 [ Mus musculus (house mouse) ]

Gene ID: 75467, updated on 25-Sep-2020

Summary

Official Symbol
Stpg4provided by MGI
Official Full Name
sperm tail PG rich repeat containing 4provided by MGI
Primary source
MGI:MGI:1922717
See related
Ensembl:ENSMUSG00000036557
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
GSE; 1700011E24Rik
Expression
Restricted expression toward testis adult (RPKM 34.4) See more
Orthologs
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Genomic context

See Stpg4 in Genome Data Viewer
Location:
17; 17 E4
Exon count:
12
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (87696998..87735526, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (87389570..87428081, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (87788911..87827081, complement)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat domain 7 Neighboring gene predicted gene, 52284 Neighboring gene uncharacterized LOC102632541 Neighboring gene calmodulin 2 Neighboring gene predicted gene, 26005

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
chromatin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
chromatin binding IDA
Inferred from Direct Assay
more info
PubMed 
histone binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
histone binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
C-5 methylation of cytosine IMP
Inferred from Mutant Phenotype
more info
PubMed 
DNA demethylation of male pronucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
DNA demethylation of male pronucleus IMP
Inferred from Mutant Phenotype
more info
PubMed 
chromatin organization IEA
Inferred from Electronic Annotation
more info
 
multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
positive regulation of DNA demethylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
positive regulation of DNA demethylation IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
female pronucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
female pronucleus IDA
Inferred from Direct Assay
more info
PubMed 
germinal vesicle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
germinal vesicle IDA
Inferred from Direct Assay
more info
PubMed 
male pronucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
male pronucleus IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
protein STPG4
Names
gonad-specific expression gene protein
sperm-tail PG-rich repeat-containing protein 4
uncharacterized protein C2orf61 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_029298.1NP_083574.1  protein STPG4

    See identical proteins and their annotated locations for NP_083574.1

    Status: VALIDATED

    Source sequence(s)
    AK005861, BE456690, BY096438
    Consensus CDS
    CCDS50206.1
    UniProtKB/Swiss-Prot
    Q9DAG5
    Related
    ENSMUSP00000044250.2, ENSMUST00000040609.8

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    87696998..87735526 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006525072.4XP_006525135.1  protein STPG4 isoform X5

  2. XM_017317707.3XP_017173196.1  protein STPG4 isoform X3

  3. XM_006525071.5XP_006525134.1  protein STPG4 isoform X4

  4. XM_006525070.3XP_006525133.1  protein STPG4 isoform X1

  5. XM_011246699.3XP_011245001.1  protein STPG4 isoform X6

  6. XM_011246698.3XP_011245000.1  protein STPG4 isoform X2

RNA

  1. XR_001782126.3 RNA Sequence

  2. XR_385380.5 RNA Sequence

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