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1700001C19Rik RIKEN cDNA 1700001C19 gene [ Mus musculus (house mouse) ]

Gene ID: 75462, updated on 26-Sep-2022

Summary

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Official Symbol
1700001C19Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700001C19 geneprovided by MGI
Primary source
MGI:MGI:1922712
See related
Ensembl:ENSMUSG00000047150 AllianceGenome:MGI:1922712
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in testis adult (RPKM 50.7) and liver adult (RPKM 2.8) See more
Orthologs
human all
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Genomic context

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See 1700001C19Rik in Genome Data Viewer
Location:
17; 17 C
Exon count:
7
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (47723659..47748690, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (47412734..47437765, complement)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene guanylate cyclase activator 1B Neighboring gene guanylate cyclase activator 1a (retina) Neighboring gene Morf4 family associated protein 1 pseudogene Neighboring gene expressed sequence AI661453 Neighboring gene TATA-box binding protein associated factor 8 Neighboring gene VISTA enhancer mm1691 Neighboring gene cyclin D3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (9) citations in PubMed

See citations in PubMed for homologs of this gene provided by HomoloGene

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
putative uncharacterized protein GUCA1ANB; uncharacterized protein 114841037

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001172091.1 → NP_001165562.1  putative uncharacterized protein GUCA1ANB isoform 2

    See identical proteins and their annotated locations for NP_001165562.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) represents use of an alternate promoter and 5' UTR and uses a distinct translation start site, compared to variant 1. The resulting isoform (2) has a shorter and distinct N-terminus, compared to isoform 1.
    Source sequence(s)
    AC112683, AK005579
    UniProtKB/TrEMBL
    Q9DAS0

  2. NM_001347584.1 → NP_001334513.1  putative uncharacterized protein GUCA1ANB isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC112683
    Consensus CDS
    CCDS84317.1
    UniProtKB/TrEMBL
    E9Q6U5
    Related
    ENSMUSP00000072887.7, ENSMUST00000073143.7

  3. NM_029296.2 → NP_083572.1  putative uncharacterized protein GUCA1ANB isoform 1

    See identical proteins and their annotated locations for NP_083572.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC112683, AC139214
    Consensus CDS
    CCDS28849.1
    UniProtKB/TrEMBL
    Q8K168
    Related
    ENSMUSP00000050873.9, ENSMUST00000061885.9
    Conserved Domains (1) summary
    pfam15498
    Location:13 → 68
    Dendrin; Nephrin and CD2AP-binding protein, Dendrin

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    47723659..47748690 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030250127.1 → XP_030105987.1  uncharacterized protein 114841037 isoform X2

    Conserved Domains (1) summary
    pfam15498
    Location:11 → 66
    Dendrin; Nephrin and CD2AP-binding protein, Dendrin

  2. XM_030250126.1 → XP_030105986.1  uncharacterized protein 114841037 isoform X1

    Conserved Domains (1) summary
    pfam15498
    Location:15 → 70
    Dendrin; Nephrin and CD2AP-binding protein, Dendrin
Nucleotide Protein Strain
Heading Accession and Version

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