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exosc5 exosome component 5 [ Danio rerio (zebrafish) ]

Gene ID: 751632, updated on 1-Aug-2018

Summary

Official Symbol
exosc5provided by ZNC
Official Full Name
exosome component 5provided by ZNC
Primary source
ZFIN:ZDB-GENE-060503-675
See related
Ensembl:ENSDARG00000040557 Vega:OTTDARG00000014987
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
zgc:153707; si:ch211-194n6.2
Orthologs

Genomic context

See exosc5 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (36060291..36066102, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (36079283..36085094, complement)

Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1, regulatory subunit 13 like Neighboring gene transmembrane protein 91 Neighboring gene branched chain keto acid dehydrogenase E1, alpha polypeptide Neighboring gene beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P) a

Genomic regions, transcripts, and products

Pathways from BioSystems

General gene information

Homology

Clone Names

  • MGC153707

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
U4 snRNA 3'-end processing IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nuclear mRNA surveillance IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
polyadenylation-dependent snoRNA 3'-end processing IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
rRNA catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
cytoplasmic exosome (RNase complex) IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nuclear exosome (RNase complex) IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
exosome complex component RRP46

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001045352.2NP_001038817.2  exosome complex component RRP46

    Status: VALIDATED

    Source sequence(s)
    EH452602, EH561913
    Related
    ENSDARP00000059351.4, OTTDARP00000015153, ENSDART00000059352.6, OTTDART00000017937
    Conserved Domains (2) summary
    cd11372
    Location:22219
    RNase_PH_RRP46; RRP46 subunit of eukaryotic exosome
    COG0689
    Location:17216
    Rph; Ribonuclease PH [Translation, ribosomal structure and biogenesis]

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007129.7 Reference GRCz11 Primary Assembly

    Range
    36060291..36066102 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395037.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    148443..154254 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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