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setd8a SET domain containing (lysine methyltransferase) 8a [ Danio rerio (zebrafish) ]

Gene ID: 751629, updated on 8-May-2017
Official Symbol
setd8aprovided by ZNC
Official Full Name
SET domain containing (lysine methyltransferase) 8aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-060825-37
See related
Ensembl:ENSDARG00000105231
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
set8a; kmt5aa; wu:fj33f02; zgc:153719
Orthologs
Location:
chromosome: 10
Exon count:
7
Annotation release Status Assembly Chr Location
105 current GRCz10 (GCF_000002035.5) 10 NC_007121.6 (44446488..44455689)
103 previous assembly Zv9 (GCF_000002035.4) 10 NC_007121.5 (46475541..46484742)

Chromosome 10 - NC_007121.6Genomic Context describing neighboring genes Neighboring gene unconventional myosin-XVIIIb-like Neighboring gene strawberry notch homolog 1 (Drosophila) Neighboring gene uncharacterized LOC108191564 Neighboring gene small nuclear ribonucleoprotein 35 (U11/U12) Neighboring gene uncharacterized LOC108191562

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Clone Names

  • MGC153719

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
histone-lysine N-methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
histone-lysine N-methyltransferase activity ISS
Inferred from Sequence or Structural Similarity
more info
 
methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
transferase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
cell cycle IEA
Inferred from Electronic Annotation
more info
 
cell division IEA
Inferred from Electronic Annotation
more info
 
covalent chromatin modification IEA
Inferred from Electronic Annotation
more info
 
dorsal/ventral pattern formation IGI
Inferred from Genetic Interaction
more info
PubMed 
dorsal/ventral pattern formation IMP
Inferred from Mutant Phenotype
more info
PubMed 
methylation IEA
Inferred from Electronic Annotation
more info
 
positive regulation of gene expression IGI
Inferred from Genetic Interaction
more info
PubMed 
positive regulation of gene expression IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
chromosome IEA
Inferred from Electronic Annotation
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
N-lysine methyltransferase KMT5A-A
Names
N-lysine methyltransferase SETD8-A
PR/SET domain containing protein 8a
SET domain-containing 8
SET domain-containing protein 8-A
histone-lysine N-methyltransferase KMT5A-A
histone-lysine N-methyltransferase SETD8-A
lysine-specific methylase 5A-A
NP_001038814.2

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001045349.2NP_001038814.2  N-lysine methyltransferase KMT5A-A

    See identical proteins and their annotated locations for NP_001038814.2

    Status: PROVISIONAL

    Source sequence(s)
    DQ343297
    UniProtKB/Swiss-Prot
    Q071E0
    Related
    ENSDARP00000140543.1, ENSDART00000161744.1
    Conserved Domains (1) summary
    smart00317
    Location:212334
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz10 Primary Assembly

Genomic

  1. NC_007121.6 Reference GRCz10 Primary Assembly

    Range
    44446488..44455689
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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