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4930519F16Rik RIKEN cDNA 4930519F16 gene [ Mus musculus (house mouse) ]

Gene ID: 75106, updated on 26-Sep-2022

Summary

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Official Symbol
4930519F16Rikprovided by MGI
Official Full Name
RIKEN cDNA 4930519F16 geneprovided by MGI
Primary source
MGI:MGI:1922356
See related
Ensembl:ENSMUSG00000031325 AllianceGenome:MGI:1922356
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ppnx
Expression
Restricted expression toward testis adult (RPKM 1.7) See more
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Genomic context

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See 4930519F16Rik in Genome Data Viewer
Location:
X D; X 45.97 cM
Exon count:
7
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) X NC_000086.8 (102226584..102300238, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (103182978..103256632, complement)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene tubulin, alpha 4A pseudogene Neighboring gene ring finger and WD repeat domain 2 (Rfwd2) pseudogene Neighboring gene nucleosome assembly protein 1-like 2 Neighboring gene predicted gene 9050 Neighboring gene ribosomal protein L18A pseudogene Neighboring gene UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2 pseudogene Neighboring gene caudal type homeobox 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Comparative sequence analysis of the X-inactivation center region in mouse, human, and bovine. Chureau C, et al. Genome Res, 2002 Jun. PMID 12045143, Free PMC Article
  2. Characterization of an exchangeable gene trap using pU-17 carrying a stop codon-beta geo cassette. Taniwaki T, et al. Dev Growth Differ, 2005 Apr. PMID 15840001
  3. Exchangeable gene trap using the Cre/mutated lox system. Araki K, et al. Cell Mol Biol (Noisy-le-grand), 1999 Jul. PMID 10512203
  4. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
  5. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article

See all (17) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
RIKEN cDNA 4930519F16; uncharacterized protein LOC75106
Names
novel gene likely coding for a serine proteases, trypsin family/Chymotrypsin serine protease family (S1) containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001358270.2 → NP_001345199.1  uncharacterized protein LOC75106 isoform 1 precursor

    Status: VALIDATED

    Source sequence(s)
    AL772378, AL773526
    UniProtKB/TrEMBL
    Q8K3S0
    Related
    ENSMUST00000033688.12
    Conserved Domains (1) summary
    cl21584
    Location:47 → 251
    Tryp_SPc; Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad ...

  2. NM_001382418.1 → NP_001369347.1  uncharacterized protein LOC75106 isoform 2 precursor

    Status: VALIDATED

    Source sequence(s)
    AL772378
    UniProtKB/TrEMBL
    Q8K3S3

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    102226584..102300238 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011247688.2 → XP_011245990.1  RIKEN cDNA 4930519F16 isoform X1

    See identical proteins and their annotated locations for XP_011245990.1

    UniProtKB/TrEMBL
    Q8K3S1
    Conserved Domains (1) summary
    cl21584
    Location:47 → 251
    Tryp_SPc; Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad ...

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_029170.1: Suppressed sequence

    Description
    NM_029170.1: This RefSeq was removed because currently there is insufficient support for the transcript and protein.
Nucleotide Protein Strain
Heading Accession and Version

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