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LOC7494473 laccase-4 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7494473, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7494473
Gene description
laccase-4
Locus tag
POPTR_008G064000v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Also known as
LAC2; laccase
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Genomic context

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Location:
chromosome: 8
Exon count:
6
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 8 NC_037292.2 (3862237..3865816)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 8 NC_037292.1 (3873850..3877479)

Chromosome 8 - NC_037292.2Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L35a-1 Neighboring gene sedoheptulose-1,7-bisphosphatase, chloroplastic Neighboring gene uncharacterized LOC7494472 Neighboring gene transcription factor DIVARICATA Neighboring gene coronatine-insensitive protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Biochemical characterization, molecular cloning and expression of laccases - a divergent gene family - in poplar. Ranocha P, et al. Eur J Biochem, 1999 Jan. PMID 9914531
  2. Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding. Ralph SG, et al. BMC Genomics, 2008 Jan 29. PMID 18230180, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydroquinone:oxygen oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lignin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laccase-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037292.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    3862237..3865816
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002311166.3 → XP_002311202.1  laccase-4

    See identical proteins and their annotated locations for XP_002311202.1

    UniProtKB/TrEMBL
    B9HHK7
    Conserved Domains (1) summary
    TIGR03389
    Location:23 → 556
    laccase; laccase, plant
Nucleotide Protein
Heading Accession and Version

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