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LOC7486688 pectinesterase [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7486688, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7486688
Gene description
pectinesterase
Locus tag
POPTR_001G209200v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 1 NC_037285.2 (21406666..21408680, complement)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 1 NC_037285.1 (20986766..20988781, complement)

Chromosome 1 - NC_037285.2Genomic Context describing neighboring genes Neighboring gene pectinesterase Neighboring gene partner of Y14 and mago Neighboring gene basic blue protein Neighboring gene uncharacterized LOC7486685

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectinesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pectinesterase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall modification IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pectinesterase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037285.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    21406666..21408680 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002298149.3 → XP_002298185.1  pectinesterase

    See identical proteins and their annotated locations for XP_002298185.1

    UniProtKB/TrEMBL
    B9GEY3
    Conserved Domains (1) summary
    cl27601
    Location:44 → 556
    Pectinesterase; Pectinesterase
Nucleotide Protein
Heading Accession and Version

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