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LOC7485451 G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7485451, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7485451
Gene description
G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1
Locus tag
POPTR_006G053700v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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Location:
chromosome: 6
Exon count:
1
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 6 NC_037290.2 (3768853..3772466, complement)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 6 NC_037290.1 (3902048..3905682, complement)

Chromosome 6 - NC_037290.2Genomic Context describing neighboring genes Neighboring gene guanylate kinase 2 Neighboring gene nuclear transcription factor Y subunit A-10 Neighboring gene zinc finger CCCH domain-containing protein 30 Neighboring gene uncharacterized LOC7496147

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in recognition of pollen IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037290.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    3768853..3772466 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002308927.4 → XP_002308963.1  G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1

    See identical proteins and their annotated locations for XP_002308963.1

    UniProtKB/TrEMBL
    B9H9X2
    Conserved Domains (4) summary
    pfam00954
    Location:249 → 312
    S_locus_glycop; S-locus glycoprotein domain
    pfam01453
    Location:82 → 180
    B_lectin; D-mannose binding lectin
    cl00112
    Location:325 → 407
    PAN_APPLE; PAN/APPLE-like domain; present in N-terminal (N) domains of plasminogen/ hepatocyte growth factor proteins, plasma prekallikrein/coagulation factor XI and microneme antigen proteins, plant receptor-like protein kinases, and various nematode and leech ...
    cl21453
    Location:504 → 733
    PKc_like; Protein Kinases, catalytic domain
Nucleotide Protein
Heading Accession and Version

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