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LOC7485188 transcription factor MYB54 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7485188, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7485188
Gene description
transcription factor MYB54
Locus tag
POPTR_012G039400v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Also known as
MYB167
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Genomic context

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See LOC7485188 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
3
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 12 NC_037296.2 (3516416..3518365)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 12 NC_037296.1 (3487645..3489611)

Chromosome 12 - NC_037296.2Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 5B Neighboring gene DNA polymerase epsilon subunit B Neighboring gene uncharacterized LOC112323483 Neighboring gene uncharacterized LOC7454018

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor MYB54
Names
MYB family protein
MYB transcription factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037296.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    3516416..3518365
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002318288.3 → XP_002318324.1  transcription factor MYB54

    See identical proteins and their annotated locations for XP_002318324.1

    UniProtKB/TrEMBL
    B9I4W4
    Conserved Domains (1) summary
    cl28544
    Location:4 → 108
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
Nucleotide Protein
Heading Accession and Version

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