Glt8d2 glycosyltransferase 8 domain containing 2 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Glt8d2provided by MGI
Official Full Name: glycosyltransferase 8 domain containing 2provided by MGI
Primary source: MGI:MGI:1922032
See related: Ensembl:ENSMUSG00000020251 AllianceGenome:MGI:1922032
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: 1110021D20Rik
Summary: Predicted to enable glycosyltransferase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human GLT8D2 (glycosyltransferase 8 domain containing 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Broad expression in bladder adult (RPKM 5.9), limb E14.5 (RPKM 5.3) and 16 other tissues See more
Orthologs: human all
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Genomic context

Location:: 10; 10 C1

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
109	current	GRCm39 (GCF_000001635.27)	10	NC_000076.7 (82486262..82529846, complement)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	10	NC_000076.6 (82650431..82694125, complement)

Chromosome 10 - NC_000076.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Targeted (2) 1 citation
Endonuclease-mediated (1)

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

D10Mit42 (e-PCR), detects polymorphism
- UniSTS:116375

Homology

Homologs of the Glt8d2 gene: The Glt8d2 gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, rat, chicken, zebrafish, and frog.
Orthologs from Annotation Pipeline: 496 organisms have orthologs with human gene Glt8d2
Orthologs

Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables glycosyltransferase activity	IEA Inferred from Electronic Annotation more info
enables transferase activity	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in Golgi apparatus	IBA Inferred from Biological aspect of Ancestor more info	PubMed
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: glycosyltransferase 8 domain-containing protein 2

XP_006514318.1

EC 2.4.1.-

XP_030101195.1

EC 2.4.1.-

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_029102.4 → NP_083378.3 glycosyltransferase 8 domain-containing protein 2

Status: VALIDATED

Source sequence(s)

AC152980

Consensus CDS

CCDS24071.1

UniProtKB/Swiss-Prot

Q9D163

Related

ENSMUSP00000020485.5, ENSMUST00000020485.11

Conserved Domains (1) summary

cl11394
Location:69 → 336

Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

NC_000076.7 Reference GRCm39 C57BL/6J

Range

82486262..82529846 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_006514255.5 → XP_006514318.1 glycosyltransferase 8 domain-containing protein 2 isoform X1

See identical proteins and their annotated locations for XP_006514318.1

UniProtKB/TrEMBL

E9QLV1

Conserved Domains (1) summary

cl11394
Location:71 → 338

Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
XM_030245335.2 → XP_030101195.1 glycosyltransferase 8 domain-containing protein 2 isoform X1

UniProtKB/TrEMBL

E9QLV1

Conserved Domains (1) summary

cl11394
Location:71 → 338

Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold