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LOC7465946 protein PHR1-LIKE 1 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7465946, updated on 1-Jun-2019

Summary

Gene symbol
LOC7465946
Gene description
protein PHR1-LIKE 1
Locus tag
POPTR_019G020900v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Genomic context

See LOC7465946 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Pop_tri_v3 (GCF_000002775.4) 19 NC_037303.1 (2397185..2401833, complement)

Chromosome 19 - NC_037303.1Genomic Context describing neighboring genes Neighboring gene AAA-ATPase ASD, mitochondrial Neighboring gene AAA-ATPase ASD, mitochondrial Neighboring gene transfer RNA alanine (anticodon UGC) Neighboring gene WEB family protein At1g75720-like

Genomic regions, transcripts, and products

Genomic Sequence:
NC_037303.1 Chromosome 19 Reference Pop_tri_v3 Primary Assembly

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pop_tri_v3 Primary Assembly

Genomic

  1. NC_037303.1 Reference Pop_tri_v3 Primary Assembly

    Range
    2397185..2401833 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024591584.1XP_024447352.1  protein PHR1-LIKE 1 isoform X3

    Conserved Domains (2) summary
    TIGR01557
    Location:200254
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    pfam14379
    Location:282327
    Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif
  2. XM_024591585.1XP_024447353.1  protein PHR1-LIKE 1 isoform X4

    Conserved Domains (2) summary
    TIGR01557
    Location:185239
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    pfam14379
    Location:270315
    Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif
  3. XM_002325740.3XP_002325776.3  protein PHR1-LIKE 1 isoform X2

    Conserved Domains (2) summary
    TIGR01557
    Location:200254
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    pfam14379
    Location:285330
    Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif
  4. XM_024591583.1XP_024447351.1  protein PHR1-LIKE 1 isoform X2

    Conserved Domains (2) summary
    TIGR01557
    Location:200254
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    pfam14379
    Location:285330
    Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif
  5. XM_024591582.1XP_024447350.1  protein PHR1-LIKE 1 isoform X1

    Conserved Domains (2) summary
    TIGR01557
    Location:230284
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    pfam14379
    Location:315360
    Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif
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