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4933439C10Rik RIKEN cDNA 4933439C10 gene [ Mus musculus (house mouse) ]

Gene ID: 74476, updated on 22-Oct-2024

Summary

Official Symbol
4933439C10Rikprovided by MGI
Official Full Name
RIKEN cDNA 4933439C10 geneprovided by MGI
Primary source
MGI:MGI:1921726
See related
Ensembl:ENSMUSG00000072893 AllianceGenome:MGI:1921726
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2610028M21Rik
Expression
Ubiquitous expression in CNS E18 (RPKM 24.7), CNS E14 (RPKM 21.2) and 28 other tissues See more
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Genomic context

See 4933439C10Rik in Genome Data Viewer
Location:
11 B1.3; 11 37.72 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (59396479..59402211)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (59505653..59511385)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_29624 Neighboring gene jumonji domain containing 4 Neighboring gene zinc finger protein 867 Neighboring gene ariadne homolog 2 pseudogene Neighboring gene zinc finger with KRAB and SCAN domains 17 Neighboring gene NLR family, pyrin domain containing 3 Neighboring gene olfactory receptor family 2 subfamily B member 11

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015585.3 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AK017115, AK163429, BY237320
    Related
    ENSMUST00000145533.9
  2. NR_135273.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate 3'-terminal exon which extends past a splice site that is used in variant 1.
    Source sequence(s)
    AK011602, AK017115, BC099591, BY237320

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    59396479..59402211
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)