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THAPSDRAFT_262610 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7444853, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_262610
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_262610
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_262610 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
1
Sequence:
Chromosome: 5; NC_012068.1 (1789582..1790286, complement)

Chromosome 5 - NC_012068.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012068.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleoside phosphate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribose phosphate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein
XP_002290828.1
  • Putative protein with similarities to ADP-ribose pyrophosphatase (ADP-ribose diphosphatase) (Adenosine diphosphoribose pyrophosphatase) (ADPR-PPase) (ADP-ribose phosphohydrolase); similar to gi|586919|sp|Q01976|ADPP_YEAST ADP-ribose pyrophosphatase(model%: 51, hit%: 50, score: 307, %id: 57) [Saccharomyces cerevisiae]; putative protein with similarity to adp-ribose pyrophosphatase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012068.1 Reference assembly

    Range
    1789582..1790286 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002290792.2 → XP_002290828.1  hypothetical protein THAPSDRAFT_262610 [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002290828.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C3K5
    Conserved Domains (1) summary
    cd03424
    Location:71 → 221
    ADPRase_NUDT5; ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, ...
Nucleotide Protein
Heading Accession and Version

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