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4932438H23Rik RIKEN cDNA 4932438H23 gene [ Mus musculus (house mouse) ]

Gene ID: 74387, updated on 31-Jan-2019

Summary

Official Symbol
4932438H23Rikprovided by MGI
Official Full Name
RIKEN cDNA 4932438H23 geneprovided by MGI
Primary source
MGI:MGI:1921637
See related
Ensembl:ENSMUSG00000039851
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AI550392; 4931406G06Rik
Expression
Biased expression in testis adult (RPKM 4.0), genital fat pad adult (RPKM 1.3) and 1 other tissue See more
Orthologs

Genomic context

See 4932438H23Rik in Genome Data Viewer
Location:
16; 16 C3.3
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 16 NC_000082.6 (91044646..91069624, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 16 NC_000082.5 (91054180..91069390, complement)

Chromosome 16 - NC_000082.6Genomic Context describing neighboring genes Neighboring gene synaptojanin 1 Neighboring gene RIKEN cDNA 4930404I05 gene Neighboring gene predicted gene, 41491 Neighboring gene PAX3 and PAX7 binding protein 1 Neighboring gene H3 histone, family 3A, pseudogene 2 Neighboring gene predicted gene, 41492 Neighboring gene predicted gene 9881

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein C21orf62 homolog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001163695.1NP_001157167.1  uncharacterized protein C21orf62 homolog precursor

    See identical proteins and their annotated locations for NP_001157167.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate exon in the 5' UTR, compared to variant 1. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AC141885, AK016554, AK035767
    Consensus CDS
    CCDS28322.1
    UniProtKB/Swiss-Prot
    Q9D4G1
    Related
    ENSMUSP00000109710.1, ENSMUST00000114076.1
    Conserved Domains (1) summary
    pfam15137
    Location:24230
    DUF4571; Domain of unknown function (DUF4571)
  2. NM_028905.3NP_083181.1  uncharacterized protein C21orf62 homolog precursor

    See identical proteins and their annotated locations for NP_083181.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AC141885, AK016554
    Consensus CDS
    CCDS28322.1
    UniProtKB/Swiss-Prot
    Q9D4G1
    Related
    ENSMUSP00000040111.1, ENSMUST00000035689.7
    Conserved Domains (1) summary
    pfam15137
    Location:24230
    DUF4571; Domain of unknown function (DUF4571)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000082.6 Reference GRCm38.p4 C57BL/6J

    Range
    91044646..91069624 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017317151.1XP_017172640.1  uncharacterized protein C21orf62 homolog isoform X1

    UniProtKB/Swiss-Prot
    Q9D4G1
    Conserved Domains (1) summary
    pfam15137
    Location:24230
    DUF4571; Domain of unknown function (DUF4571)
  2. XM_017317150.1XP_017172639.1  uncharacterized protein C21orf62 homolog isoform X1

    UniProtKB/Swiss-Prot
    Q9D4G1
    Conserved Domains (1) summary
    pfam15137
    Location:24230
    DUF4571; Domain of unknown function (DUF4571)
  3. XM_006523104.3XP_006523167.1  uncharacterized protein C21orf62 homolog isoform X1

    See identical proteins and their annotated locations for XP_006523167.1

    UniProtKB/Swiss-Prot
    Q9D4G1
    Conserved Domains (1) summary
    pfam15137
    Location:24230
    DUF4571; Domain of unknown function (DUF4571)
  4. XM_011246155.2XP_011244457.1  uncharacterized protein C21orf62 homolog isoform X1

    See identical proteins and their annotated locations for XP_011244457.1

    UniProtKB/Swiss-Prot
    Q9D4G1
    Conserved Domains (1) summary
    pfam15137
    Location:24230
    DUF4571; Domain of unknown function (DUF4571)
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