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Rbm26 RNA binding motif protein 26 [ Mus musculus (house mouse) ]

Gene ID: 74213, updated on 26-Sep-2022

Summary

Official Symbol
Rbm26provided by MGI
Official Full Name
RNA binding motif protein 26provided by MGI
Primary source
MGI:MGI:1921463
See related
Ensembl:ENSMUSG00000022119 AllianceGenome:MGI:1921463
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Se70-2; MLZ-393; Pro1777; 1700009P03Rik; C230097K14Rik
Summary
Predicted to enable RNA binding activity. Predicted to be involved in mRNA processing. Predicted to be active in nucleus. Is expressed in several structures, including brain; early conceptus; genitourinary system; spleen; and submandibular gland. Orthologous to human RBM26 (RNA binding motif protein 26). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E11.5 (RPKM 9.9), limb E14.5 (RPKM 8.2) and 28 other tissues See more
Orthologs
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Genomic context

See Rbm26 in Genome Data Viewer
Location:
14; 14 E2.3
Exon count:
26
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (105344187..105418475, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (105106751..105181039, complement)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 24280 Neighboring gene PRP38 pre-mRNA processing factor 38 domain containing A pseudogene Neighboring gene plastin 3 (T-isoform) pseudogene Neighboring gene predicted gene, 22290

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 
  • Endonuclease-mediated (1) 

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
RNA-binding protein 26
Names
cutaneous T-cell lymphoma tumor antigen se70-2
protein expressed in male leptotene and zygotene spermatocytes 393

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001368683.1NP_001355612.1  RNA-binding protein 26 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC113125, AC146601
    UniProtKB/Swiss-Prot
    Q921K4
    Related
    ENSMUSP00000128197.2, ENSMUST00000163499.2
    Conserved Domains (6) summary
    smart00356
    Location:294314
    ZnF_C3H1; zinc finger
    cd12258
    Location:891962
    RRM2_RBM26_like; RNA recognition motif 2 of vertebrate RNA-binding protein 26 (RBM26) and similar proteins
    cd12516
    Location:536611
    RRM1_RBM26; RNA recognition motif 1 of vertebrate RNA-binding protein 26 (RBM26)
    pfam08648
    Location:133165
    DUF1777; Protein of unknown function (DUF1777)
    pfam03962
    Location:726821
    Mnd1; Mnd1 family
    cl02562
    Location:1174
    PWI; PWI domain
  2. NM_001368684.1NP_001355613.1  RNA-binding protein 26 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC113125, AC146601
    Consensus CDS
    CCDS88725.1
    Related
    ENSMUSP00000022715.8, ENSMUST00000022715.14
    Conserved Domains (6) summary
    smart00356
    Location:294314
    ZnF_C3H1; zinc finger
    cd12258
    Location:886957
    RRM2_RBM26_like; RNA recognition motif 2 of vertebrate RNA-binding protein 26 (RBM26) and similar proteins
    cd12516
    Location:531606
    RRM1_RBM26; RNA recognition motif 1 of vertebrate RNA-binding protein 26 (RBM26)
    pfam08648
    Location:133165
    DUF1777; Protein of unknown function (DUF1777)
    pfam03962
    Location:721816
    Mnd1; Mnd1 family
    cl02562
    Location:1174
    PWI; PWI domain
  3. NM_001368685.1NP_001355614.1  RNA-binding protein 26 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC113125, AC146601
    Conserved Domains (6) summary
    smart00356
    Location:294314
    ZnF_C3H1; zinc finger
    cd12258
    Location:896967
    RRM2_RBM26_like; RNA recognition motif 2 of vertebrate RNA-binding protein 26 (RBM26) and similar proteins
    cd12516
    Location:541616
    RRM1_RBM26; RNA recognition motif 1 of vertebrate RNA-binding protein 26 (RBM26)
    pfam08648
    Location:133165
    DUF1777; Protein of unknown function (DUF1777)
    pfam03962
    Location:731826
    Mnd1; Mnd1 family
    cl02562
    Location:1174
    PWI; PWI domain
  4. NM_134077.5NP_598838.3  RNA-binding protein 26 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC113125, AC146601
    Consensus CDS
    CCDS37003.1
    UniProtKB/Swiss-Prot
    Q6NZN0
    UniProtKB/TrEMBL
    E9PUF4
    Related
    ENSMUSP00000097901.4, ENSMUST00000100327.10
    Conserved Domains (6) summary
    smart00356
    Location:294314
    ZnF_C3H1; zinc finger
    cd12258
    Location:862933
    RRM2_RBM26_like; RNA recognition motif 2 of vertebrate RNA-binding protein 26 (RBM26) and similar proteins
    cd12516
    Location:531606
    RRM1_RBM26; RNA recognition motif 1 of vertebrate RNA-binding protein 26 (RBM26)
    pfam08648
    Location:132165
    DUF1777; Protein of unknown function (DUF1777)
    pfam13864
    Location:714795
    Enkurin; Calmodulin-binding
    cl02562
    Location:1176
    PWI; PWI domain

RNA

  1. NR_166779.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC113125, AC146601

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    105344187..105418475 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036158877.1XP_036014770.1  RNA-binding protein 26 isoform X16

    Conserved Domains (5) summary
    smart00356
    Location:497517
    ZnF_C3H1; zinc finger
    TIGR04523
    Location:8961017
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    cd12258
    Location:10621133
    RRM2_RBM26_like; RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding protein 26 (RBM26) and similar proteins
    cd12516
    Location:734809
    RRM1_RBM26; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding protein 26 (RBM26)
    cl02562
    Location:214279
    PWI; PWI domain
  2. XM_036158871.1XP_036014764.1  RNA-binding protein 26 isoform X8

    Conserved Domains (5) summary
    smart00356
    Location:497517
    ZnF_C3H1; zinc finger
    TIGR04523
    Location:9201041
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    cd12258
    Location:10861157
    RRM2_RBM26_like; RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding protein 26 (RBM26) and similar proteins
    cd12516
    Location:734809
    RRM1_RBM26; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding protein 26 (RBM26)
    cl02562
    Location:214279
    PWI; PWI domain
  3. XM_036158876.1XP_036014769.1  RNA-binding protein 26 isoform X15

    Conserved Domains (6) summary
    smart00356
    Location:497517
    ZnF_C3H1; zinc finger
    TIGR04523
    Location:8991020
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    cd12258
    Location:10651136
    RRM2_RBM26_like; RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding protein 26 (RBM26) and similar proteins
    cd12516
    Location:734809
    RRM1_RBM26; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding protein 26 (RBM26)
    cl02562
    Location:214279
    PWI; PWI domain
    cl41773
    Location:811906
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4
  4. XM_030248075.1XP_030103935.1  RNA-binding protein 26 isoform X14

    Conserved Domains (5) summary
    smart00356
    Location:497517
    ZnF_C3H1; zinc finger
    cd12258
    Location:10891160
    RRM2_RBM26_like; RNA recognition motif 2 of vertebrate RNA-binding protein 26 (RBM26) and similar proteins
    cd12516
    Location:734809
    RRM1_RBM26; RNA recognition motif 1 of vertebrate RNA-binding protein 26 (RBM26)
    TIGR04523
    Location:9231044
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    cl02562
    Location:214277
    PWI; PWI domain
  5. XM_030248069.1XP_030103929.1  RNA-binding protein 26 isoform X7

    Conserved Domains (5) summary
    smart00356
    Location:497517
    ZnF_C3H1; zinc finger
    cd12258
    Location:10891160
    RRM2_RBM26_like; RNA recognition motif 2 of vertebrate RNA-binding protein 26 (RBM26) and similar proteins
    cd12516
    Location:734809
    RRM1_RBM26; RNA recognition motif 1 of vertebrate RNA-binding protein 26 (RBM26)
    TIGR04523
    Location:9231044
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    cl02562
    Location:214277
    PWI; PWI domain
  6. XM_036158870.1XP_036014763.1  RNA-binding protein 26 isoform X6

    Related
    ENSMUSP00000126414.2, ENSMUST00000163545.8
    Conserved Domains (5) summary
    smart00356
    Location:497517
    ZnF_C3H1; zinc finger
    TIGR04523
    Location:9251046
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    cd12258
    Location:10911162
    RRM2_RBM26_like; RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding protein 26 (RBM26) and similar proteins
    cd12516
    Location:739814
    RRM1_RBM26; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding protein 26 (RBM26)
    cl02562
    Location:214279
    PWI; PWI domain
  7. XM_036158869.1XP_036014762.1  RNA-binding protein 26 isoform X5

    Conserved Domains (5) summary
    smart00356
    Location:497517
    ZnF_C3H1; zinc finger
    TIGR04523
    Location:9281049
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    cd12258
    Location:10941165
    RRM2_RBM26_like; RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding protein 26 (RBM26) and similar proteins
    cd12516
    Location:739814
    RRM1_RBM26; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding protein 26 (RBM26)
    cl02562
    Location:214279
    PWI; PWI domain
  8. XM_036158868.1XP_036014761.1  RNA-binding protein 26 isoform X4

    Conserved Domains (5) summary
    smart00356
    Location:497517
    ZnF_C3H1; zinc finger
    TIGR04523
    Location:9301051
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    cd12258
    Location:10961167
    RRM2_RBM26_like; RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding protein 26 (RBM26) and similar proteins
    cd12516
    Location:744819
    RRM1_RBM26; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding protein 26 (RBM26)
    cl02562
    Location:214279
    PWI; PWI domain
  9. XM_036158875.1XP_036014768.1  RNA-binding protein 26 isoform X13

    Conserved Domains (6) summary
    smart00356
    Location:497517
    ZnF_C3H1; zinc finger
    TIGR04523
    Location:9091030
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    cd12258
    Location:10751146
    RRM2_RBM26_like; RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding protein 26 (RBM26) and similar proteins
    cd12516
    Location:744819
    RRM1_RBM26; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding protein 26 (RBM26)
    cl02562
    Location:214279
    PWI; PWI domain
    cl41773
    Location:821916
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4
  10. XM_036158867.1XP_036014760.1  RNA-binding protein 26 isoform X3

    Conserved Domains (5) summary
    smart00356
    Location:497517
    ZnF_C3H1; zinc finger
    TIGR04523
    Location:9331054
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    cd12258
    Location:10991170
    RRM2_RBM26_like; RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding protein 26 (RBM26) and similar proteins
    cd12516
    Location:744819
    RRM1_RBM26; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding protein 26 (RBM26)
    cl02562
    Location:214279
    PWI; PWI domain
  11. XM_036158874.1XP_036014767.1  RNA-binding protein 26 isoform X12

    Conserved Domains (5) summary
    smart00356
    Location:497517
    ZnF_C3H1; zinc finger
    TIGR04523
    Location:9351056
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    cd12258
    Location:11011172
    RRM2_RBM26_like; RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding protein 26 (RBM26) and similar proteins
    cd12516
    Location:749824
    RRM1_RBM26; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding protein 26 (RBM26)
    cl02562
    Location:214279
    PWI; PWI domain
  12. XM_036158866.1XP_036014759.1  RNA-binding protein 26 isoform X2

    Conserved Domains (5) summary
    smart00356
    Location:497517
    ZnF_C3H1; zinc finger
    TIGR04523
    Location:9351056
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    cd12258
    Location:11011172
    RRM2_RBM26_like; RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding protein 26 (RBM26) and similar proteins
    cd12516
    Location:749824
    RRM1_RBM26; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding protein 26 (RBM26)
    cl02562
    Location:214279
    PWI; PWI domain
  13. XM_036158873.1XP_036014766.1  RNA-binding protein 26 isoform X11

    Conserved Domains (6) summary
    smart00356
    Location:497517
    ZnF_C3H1; zinc finger
    TIGR04523
    Location:9141035
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    cd12258
    Location:10801151
    RRM2_RBM26_like; RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding protein 26 (RBM26) and similar proteins
    cd12516
    Location:749824
    RRM1_RBM26; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding protein 26 (RBM26)
    cl02562
    Location:214279
    PWI; PWI domain
    cl41773
    Location:826921
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4
  14. XM_036158872.1XP_036014765.1  RNA-binding protein 26 isoform X11

    Conserved Domains (6) summary
    smart00356
    Location:497517
    ZnF_C3H1; zinc finger
    TIGR04523
    Location:9141035
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    cd12258
    Location:10801151
    RRM2_RBM26_like; RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding protein 26 (RBM26) and similar proteins
    cd12516
    Location:749824
    RRM1_RBM26; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding protein 26 (RBM26)
    cl02562
    Location:214279
    PWI; PWI domain
    cl41773
    Location:826921
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4
  15. XM_030248072.1XP_030103932.1  RNA-binding protein 26 isoform X10

    Conserved Domains (5) summary
    smart00356
    Location:497517
    ZnF_C3H1; zinc finger
    cd12258
    Location:11041175
    RRM2_RBM26_like; RNA recognition motif 2 of vertebrate RNA-binding protein 26 (RBM26) and similar proteins
    cd12516
    Location:749824
    RRM1_RBM26; RNA recognition motif 1 of vertebrate RNA-binding protein 26 (RBM26)
    TIGR04523
    Location:9381059
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    cl02562
    Location:214277
    PWI; PWI domain
  16. XM_030248071.1XP_030103931.1  RNA-binding protein 26 isoform X9

    Conserved Domains (5) summary
    smart00356
    Location:497517
    ZnF_C3H1; zinc finger
    cd12258
    Location:11041175
    RRM2_RBM26_like; RNA recognition motif 2 of vertebrate RNA-binding protein 26 (RBM26) and similar proteins
    cd12516
    Location:749824
    RRM1_RBM26; RNA recognition motif 1 of vertebrate RNA-binding protein 26 (RBM26)
    TIGR04523
    Location:9381059
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    cl02562
    Location:214277
    PWI; PWI domain
  17. XM_030248061.1XP_030103921.1  RNA-binding protein 26 isoform X1

    Conserved Domains (5) summary
    smart00356
    Location:497517
    ZnF_C3H1; zinc finger
    cd12258
    Location:11041175
    RRM2_RBM26_like; RNA recognition motif 2 of vertebrate RNA-binding protein 26 (RBM26) and similar proteins
    cd12516
    Location:749824
    RRM1_RBM26; RNA recognition motif 1 of vertebrate RNA-binding protein 26 (RBM26)
    TIGR04523
    Location:9381059
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    cl02562
    Location:214277
    PWI; PWI domain
  18. XM_030248062.1XP_030103922.1  RNA-binding protein 26 isoform X1

    Conserved Domains (5) summary
    smart00356
    Location:497517
    ZnF_C3H1; zinc finger
    cd12258
    Location:11041175
    RRM2_RBM26_like; RNA recognition motif 2 of vertebrate RNA-binding protein 26 (RBM26) and similar proteins
    cd12516
    Location:749824
    RRM1_RBM26; RNA recognition motif 1 of vertebrate RNA-binding protein 26 (RBM26)
    TIGR04523
    Location:9381059
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    cl02562
    Location:214277
    PWI; PWI domain
  19. XM_030248058.1XP_030103918.1  RNA-binding protein 26 isoform X1

    Conserved Domains (5) summary
    smart00356
    Location:497517
    ZnF_C3H1; zinc finger
    cd12258
    Location:11041175
    RRM2_RBM26_like; RNA recognition motif 2 of vertebrate RNA-binding protein 26 (RBM26) and similar proteins
    cd12516
    Location:749824
    RRM1_RBM26; RNA recognition motif 1 of vertebrate RNA-binding protein 26 (RBM26)
    TIGR04523
    Location:9381059
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    cl02562
    Location:214277
    PWI; PWI domain
  20. XM_030248060.1XP_030103920.1  RNA-binding protein 26 isoform X1

    Conserved Domains (5) summary
    smart00356
    Location:497517
    ZnF_C3H1; zinc finger
    cd12258
    Location:11041175
    RRM2_RBM26_like; RNA recognition motif 2 of vertebrate RNA-binding protein 26 (RBM26) and similar proteins
    cd12516
    Location:749824
    RRM1_RBM26; RNA recognition motif 1 of vertebrate RNA-binding protein 26 (RBM26)
    TIGR04523
    Location:9381059
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    cl02562
    Location:214277
    PWI; PWI domain
  21. XM_036158878.1XP_036014771.1  RNA-binding protein 26 isoform X17

    Conserved Domains (3) summary
    smart00356
    Location:497517
    ZnF_C3H1; zinc finger
    cd12516
    Location:749824
    RRM1_RBM26; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding protein 26 (RBM26)
    cl02562
    Location:214279
    PWI; PWI domain

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NR_040628.1: Suppressed sequence

    Description
    NR_040628.1: This RefSeq was removed because the gene was discontinued.