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Ctcflos CCCTC-binding factor (zinc finger protein)-like, opposite strand [ Mus musculus (house mouse) ]

Gene ID: 74161, updated on 5-Mar-2023

Summary

Official Symbol
Ctcflosprovided by MGI
Official Full Name
CCCTC-binding factor (zinc finger protein)-like, opposite strandprovided by MGI
Primary source
MGI:MGI:1921411
See related
Ensembl:ENSMUSG00000087382 AllianceGenome:MGI:1921411
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
A530094K13; 1300015D01Rik
Expression
Biased expression in subcutaneous fat pad adult (RPKM 4.8), genital fat pad adult (RPKM 4.5) and 4 other tissues See more
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Genomic context

See Ctcflos in Genome Data Viewer
Location:
2; 2 H3
Exon count:
3
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (172966542..172974997)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (173124749..173133204)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene VISTA enhancer mm1693 Neighboring gene predicted gene, 40011 Neighboring gene CCCTC-binding factor (zinc finger protein)-like Neighboring gene predicted gene, 36691 Neighboring gene predicted gene, 36749 Neighboring gene phosphoenolpyruvate carboxykinase 1, cytosolic

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040321.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK005014, AL837509
    Related
    ENSMUST00000153523.2

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    172966542..172974997
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)