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Stra6l STRA6-like [ Mus musculus (house mouse) ]

Gene ID: 74152, updated on 31-Jan-2019

Summary

Official Symbol
Stra6lprovided by MGI
Official Full Name
STRA6-likeprovided by MGI
Primary source
MGI:MGI:1921402
See related
Ensembl:ENSMUSG00000028327
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rbpr2; 1300002K09Rik
Expression
Biased expression in liver adult (RPKM 35.2), liver E18 (RPKM 4.8) and 2 other tissues See more

Genomic context

See Stra6l in Genome Data Viewer
Location:
4; 4 B1
Exon count:
24
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 4 NC_000070.6 (45822565..45887010)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (45861819..45899880)

Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene predicted gene 12409 Neighboring gene aldehyde dehydrogenase 1 family, member B1 Neighboring gene insulin-like growth factor binding protein-like 1 Neighboring gene coiled-coil domain containing 180 Neighboring gene tudor domain containing 7

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

Homology

Clone Names

  • MGC132877, MGC132878

Gene Ontology Provided by MGI

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
retinol transport IGI
Inferred from Genetic Interaction
more info
PubMed 
vitamin A import IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
vitamin A import IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
stimulated by retinoic acid gene 6 protein-like; uncharacterized protein LOC74152
Names
RBP4 receptor 2
STRA6-like protein
retinol-binding protein 4 receptor 2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001305421.1NP_001292350.1  stimulated by retinoic acid gene 6 protein-like isoform 2

    See identical proteins and their annotated locations for NP_001292350.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, lacks an alternate exon in the 5' coding region, and uses a downstream start codon compared to variant 1. It encodes isoform 2, which has a shorter N-terminus than isoform 1.
    Source sequence(s)
    AK004855, AK045033, AK050152, AL772381
    Consensus CDS
    CCDS80094.1
    UniProtKB/Swiss-Prot
    Q9DBN1
    Related
    ENSMUSP00000103411.1, ENSMUST00000107782.7
    Conserved Domains (1) summary
    pfam14752
    Location:1511
    RBP_receptor; Retinol binding protein receptor
  2. NM_028788.4NP_083064.2  stimulated by retinoic acid gene 6 protein-like isoform 1

    See identical proteins and their annotated locations for NP_083064.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform.
    Source sequence(s)
    AK050152, AK050348, AL772381, BY776586
    Consensus CDS
    CCDS18141.1
    UniProtKB/Swiss-Prot
    Q9DBN1
    Related
    ENSMUSP00000030011.5, ENSMUST00000030011.5
    Conserved Domains (1) summary
    pfam14752
    Location:13602
    RBP_receptor; Retinol binding protein receptor

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000070.6 Reference GRCm38.p4 C57BL/6J

    Range
    45822565..45887010
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006538310.3XP_006538373.1  uncharacterized protein LOC74152 isoform X1

    See identical proteins and their annotated locations for XP_006538373.1

    Conserved Domains (1) summary
    pfam14752
    Location:92681
    RBP_receptor; Retinol binding protein receptor
  2. XM_006538312.2XP_006538375.1  uncharacterized protein LOC74152 isoform X3

    See identical proteins and their annotated locations for XP_006538375.1

    UniProtKB/Swiss-Prot
    Q9DBN1
    Related
    ENSMUSP00000103412.1, ENSMUST00000107783.7
    Conserved Domains (1) summary
    pfam14752
    Location:13602
    RBP_receptor; Retinol binding protein receptor
  3. XM_006538311.3XP_006538374.1  uncharacterized protein LOC74152 isoform X1

    See identical proteins and their annotated locations for XP_006538374.1

    Conserved Domains (1) summary
    pfam14752
    Location:92681
    RBP_receptor; Retinol binding protein receptor
  4. XM_006538313.2XP_006538376.1  uncharacterized protein LOC74152 isoform X2

    See identical proteins and their annotated locations for XP_006538376.1

    UniProtKB/Swiss-Prot
    Q9DBN1
    Conserved Domains (1) summary
    pfam14752
    Location:1511
    RBP_receptor; Retinol binding protein receptor
  5. XM_006538315.2XP_006538378.1  uncharacterized protein LOC74152 isoform X2

    See identical proteins and their annotated locations for XP_006538378.1

    UniProtKB/Swiss-Prot
    Q9DBN1
    Conserved Domains (1) summary
    pfam14752
    Location:1511
    RBP_receptor; Retinol binding protein receptor
  6. XM_017320413.1XP_017175902.1  uncharacterized protein LOC74152 isoform X2

    UniProtKB/Swiss-Prot
    Q9DBN1
    Conserved Domains (1) summary
    pfam14752
    Location:1511
    RBP_receptor; Retinol binding protein receptor
  7. XM_006538314.3XP_006538377.1  uncharacterized protein LOC74152 isoform X2

    See identical proteins and their annotated locations for XP_006538377.1

    UniProtKB/Swiss-Prot
    Q9DBN1
    Conserved Domains (1) summary
    pfam14752
    Location:1511
    RBP_receptor; Retinol binding protein receptor
  8. XM_006538317.3XP_006538380.1  uncharacterized protein LOC74152 isoform X4

    Conserved Domains (1) summary
    pfam14752
    Location:1410
    RBP_receptor; Retinol binding protein receptor
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