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Czib CXXC motif containing zinc binding protein [ Mus musculus (house mouse) ]

Gene ID: 74098, updated on 12-Aug-2019

Summary

Official Symbol
Czibprovided by MGI
Official Full Name
CXXC motif containing zinc binding proteinprovided by MGI
Primary source
MGI:MGI:1921348
See related
Ensembl:ENSMUSG00000028608
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
0610037L13Rik; 1110008H16Rik
Expression
Ubiquitous expression in bladder adult (RPKM 22.6), limb E14.5 (RPKM 18.0) and 28 other tissues See more
Orthologs

Genomic context

See Czib in Genome Data Viewer
Location:
4; 4 C7
Exon count:
9
Annotation release Status Assembly Chr Location
108 current GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (107889785..107897803)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (107562504..107570407)

Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene low density lipoprotein receptor-related protein 8, apolipoprotein e receptor, opposite strand 2 Neighboring gene low density lipoprotein receptor-related protein 8, apolipoprotein e receptor Neighboring gene mago homolog, exon junction complex core component Neighboring gene carnitine palmitoyltransferase 2 Neighboring gene predicted gene, 40221

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Pathways from PubChem

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
zinc ion binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 

General protein information

Preferred Names
CXXC motif containing zinc binding protein
Names
UPF0587 protein C1orf123 homolog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001347160.1NP_001334089.1  CXXC motif containing zinc binding protein isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (2) has a shorter and distinct N-terminus compared to isoform 1.
    Source sequence(s)
    AL611936
    Consensus CDS
    CCDS84769.1
    UniProtKB/Swiss-Prot
    Q8BHG2
    Related
    ENSMUSP00000114234.1, ENSMUST00000135454.7
  2. NM_028754.2NP_083030.1  CXXC motif containing zinc binding protein isoform 1

    See identical proteins and their annotated locations for NP_083030.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AL611936
    Consensus CDS
    CCDS18442.1
    UniProtKB/Swiss-Prot
    Q8BHG2
    Related
    ENSMUSP00000119565.1, ENSMUST00000125107.7
    Conserved Domains (1) summary
    pfam05907
    Location:42193
    DUF866; Eukaryotic protein of unknown function (DUF866)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p6 C57BL/6J

Genomic

  1. NC_000070.6 Reference GRCm38.p6 C57BL/6J

    Range
    107889785..107897803
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030253839.1XP_030109699.1  CXXC motif containing zinc binding protein isoform X3

    Related
    ENSMUSP00000102338.3, ENSMUST00000106727.9
  2. XM_006503440.4XP_006503503.1  CXXC motif containing zinc binding protein isoform X4

    Conserved Domains (1) summary
    pfam05907
    Location:4129
    DUF866; Eukaryotic protein of unknown function (DUF866)
  3. XM_006503439.3XP_006503502.1  CXXC motif containing zinc binding protein isoform X2

    Conserved Domains (1) summary
    pfam05907
    Location:7137
    DUF866; Eukaryotic protein of unknown function (DUF866)
  4. XM_006503437.3XP_006503500.1  CXXC motif containing zinc binding protein isoform X1

    Conserved Domains (1) summary
    pfam05907
    Location:7158
    DUF866; Eukaryotic protein of unknown function (DUF866)
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