Format

Send to:

Choose Destination

EXOSC5 exosome component 5 [ Pan troglodytes (chimpanzee) ]

Gene ID: 740020, updated on 23-Mar-2018

Summary

Official Symbol
EXOSC5provided by VGNC
Official Full Name
exosome component 5provided by VGNC
Primary source
VGNC:VGNC:2556
See related
Ensembl:ENSPTRG00000011024
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs

Genomic context

See EXOSC5 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
6
Annotation release Status Assembly Chr Location
105 current Clint_PTRv2 (GCF_002880755.1) 19 NC_036898.1 (39476640..39488041, complement)
103 previous assembly Pan_troglodytes-2.1.4 (GCF_000001515.6) 19 NC_006486.3 (46551950..46563037, complement)

Chromosome 19 - NC_036898.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 97 Neighboring gene transforming growth factor beta 1 Neighboring gene transmembrane protein 91 Neighboring gene B9 domain containing 2 Neighboring gene branched chain keto acid dehydrogenase E1, alpha polypeptide Neighboring gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8 Neighboring gene distal membrane arm assembly complex 2

Genomic regions, transcripts, and products

Expression

  • Project title: Tissue-specific RNA-sequencing for ten non-human primate species
  • Description: Total RNA sequencing of fifteen different tissues for ten non-human primates
  • BioProject: PRJNA271912
  • Publication: PMID 25392405
  • Analysis date: Tue Apr 3 07:13:10 2018

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

  • Exosome, eukaryotes, organism-specific biosystem (from KEGG)
    Exosome, eukaryotes, organism-specific biosystemStructural complex; Genetic information processing; RNA processing
  • Exosome, eukaryotes, conserved biosystem (from KEGG)
    Exosome, eukaryotes, conserved biosystemStructural complex; Genetic information processing; RNA processing
  • RNA degradation, organism-specific biosystem (from KEGG)
    RNA degradation, organism-specific biosystemThe correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay e...
  • RNA degradation, conserved biosystem (from KEGG)
    RNA degradation, conserved biosystemThe correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay e...

General gene information

Markers

Homology

General protein information

Preferred Names
exosome complex exonuclease RRP46; exosome complex component RRP46
Names
exosome component Rrp46

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Clint_PTRv2 Primary Assembly

Genomic

  1. NC_036898.1 Reference Clint_PTRv2 Primary Assembly

    Range
    39476640..39488041 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001152170.5XP_001152170.1  exosome complex component RRP46

    See identical proteins and their annotated locations for XP_001152170.1

    UniProtKB/TrEMBL
    H2R632
    Related
    ENSPTRP00000048698.1, ENSPTRT00000020483.3
    Conserved Domains (1) summary
    cd11372
    Location:28225
    RNase_PH_RRP46; RRP46 subunit of eukaryotic exosome
Support Center