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Lexis1 lipid responsive LXR-induced inhibitor of cholesterol synthesis 1 [ Mus musculus (house mouse) ]

Gene ID: 73941, updated on 25-Jan-2022

Summary

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Official Symbol
Lexis1provided by MGI
Official Full Name
lipid responsive LXR-induced inhibitor of cholesterol synthesis 1provided by MGI
Primary source
MGI:MGI:1921191
See related
AllianceGenome:MGI:1921191
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
LeXis; 4930412L05Rik
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Lexis1 in Genome Data Viewer
Location:
4; 4 B2
Exon count:
11
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (53204932..53220803, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (53204930..53218681, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene ATP-binding cassette, sub-family A (ABC1), member 1 Neighboring gene predicted gene, 54225 Neighboring gene small nucleolar RNA SNORA48 Neighboring gene RIKEN cDNA 4930522O17 gene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Feedback modulation of cholesterol metabolism by the lipid-responsive non-coding RNA LeXis. Sallam T, et al. Nature, 2016 Jun 2. PMID 27251289, Free PMC Article
  2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    53204932..53220803 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_390567.5 RNA Sequence

  2. XR_004942041.1 RNA Sequence

  3. XR_004942040.1 RNA Sequence

  4. XR_003955406.2 RNA Sequence

  5. XR_003955408.2 RNA Sequence

  6. XR_003955407.2 RNA Sequence

  7. XR_003955404.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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