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Ift57 intraflagellar transport 57 [ Mus musculus (house mouse) ]

Gene ID: 73916, updated on 18-Nov-2018

Summary

Official Symbol
Ift57provided by MGI
Official Full Name
intraflagellar transport 57provided by MGI
Primary source
MGI:MGI:1921166
See related
Ensembl:ENSMUSG00000032965 Vega:OTTMUSG00000023119
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Hippi; MHS4R2; Esrrbl1; 4833420A15Rik
Expression
Broad expression in frontal lobe adult (RPKM 12.9), testis adult (RPKM 10.1) and 21 other tissues See more
Orthologs

Genomic context

See Ift57 in Genome Data Viewer
Location:
16; 16 B5
Exon count:
11
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 16 NC_000082.6 (49699294..49765126)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 16 NC_000082.5 (49699407..49765239)

Chromosome 16 - NC_000082.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 35938 Neighboring gene predicted gene, 31494 Neighboring gene predicted gene 15518 Neighboring gene predicted gene, 16619 Neighboring gene predicted gene 4633 Neighboring gene CD47 antigen (Rh-related antigen, integrin-associated signal transducer)

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Related articles in PubMed

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
activation of cysteine-type endopeptidase activity involved in apoptotic process ISO
Inferred from Sequence Orthology
more info
PubMed 
apoptotic process ISO
Inferred from Sequence Orthology
more info
PubMed 
heart looping IMP
Inferred from Mutant Phenotype
more info
PubMed 
intraciliary transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
intraciliary transport IC
Inferred by Curator
more info
PubMed 
left/right pattern formation IMP
Inferred from Mutant Phenotype
more info
PubMed 
motile cilium assembly IMP
Inferred from Mutant Phenotype
more info
PubMed 
negative regulation of epithelial cell proliferation IMP
Inferred from Mutant Phenotype
more info
PubMed 
neural tube closure IMP
Inferred from Mutant Phenotype
more info
PubMed 
non-motile cilium assembly IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of apoptotic process ISO
Inferred from Sequence Orthology
more info
PubMed 
smoothened signaling pathway IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Golgi apparatus IDA
Inferred from Direct Assay
more info
PubMed 
axoneme IDA
Inferred from Direct Assay
more info
PubMed 
cell projection IEA
Inferred from Electronic Annotation
more info
 
centrosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
centrosome IDA
Inferred from Direct Assay
more info
PubMed 
ciliary basal body IDA
Inferred from Direct Assay
more info
PubMed 
ciliary basal body ISO
Inferred from Sequence Orthology
more info
PubMed 
cilium IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cilium IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
dendrite terminus IDA
Inferred from Direct Assay
more info
PubMed 
intraciliary transport particle B IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
intraciliary transport particle B IDA
Inferred from Direct Assay
more info
PubMed 
photoreceptor connecting cilium IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
intraflagellar transport protein 57 homolog
Names
HIP1-interacting protein
Vestrogen-related receptor beta like 1
estrogen-related receptor beta like 1
huntingtin-interacting protein-1 protein interactor
intraflagellar transport 57 homolog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_028680.3NP_082956.2  intraflagellar transport protein 57 homolog

    See identical proteins and their annotated locations for NP_082956.2

    Status: PROVISIONAL

    Source sequence(s)
    AK047217
    Consensus CDS
    CCDS28211.1
    UniProtKB/Swiss-Prot
    Q8BXG3
    UniProtKB/TrEMBL
    B2RQZ0
    Related
    ENSMUSP00000046645.4, OTTMUSP00000026797, ENSMUST00000046777.10, OTTMUST00000055862
    Conserved Domains (1) summary
    pfam10498
    Location:45401
    IFT57; Intra-flagellar transport protein 57

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000082.6 Reference GRCm38.p4 C57BL/6J

    Range
    49699294..49765126
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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