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SARM1 sterile alpha and TIR motif containing 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 738203, updated on 17-Aug-2024

Summary

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Official Symbol
SARM1provided by VGNC
Official Full Name
sterile alpha and TIR motif containing 1provided by VGNC
Primary source
VGNC:VGNC:9584
Locus tag
CK820_G0028416
See related
Ensembl:ENSPTRG00000008917
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See SARM1 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 19 NC_072417.2 (39186165..39213294, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 17 NC_072415.1 (37370622..37398586, complement)

Chromosome 19 - NC_072417.2Genomic Context describing neighboring genes Neighboring gene ras-related protein Rap-1A-like Neighboring gene uncharacterized LOC129137668 Neighboring gene solute carrier family 46 member 1 Neighboring gene vitronectin Neighboring gene SEBOX homeobox

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD+ nucleosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of MyD88-independent toll-like receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to axon injury IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in dendrite IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sterile alpha and TIR motif-containing protein 1; NAD(+) hydrolase SARM1
XP_003315585.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072417.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    39186165..39213294 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003315537.7 → XP_003315585.1  NAD(+) hydrolase SARM1

    See identical proteins and their annotated locations for XP_003315585.1

    UniProtKB/TrEMBL
    A0A2J8LI01, A0A6D2W2X1, H2QCH4, K7AVX3
    Related
    ENSPTRP00000015218.6
    Conserved Domains (3) summary
    cd09501
    Location:409 → 477
    SAM_SARM1-like_repeat1; SAM domain ot SARM1-like proteins, repeat 1
    cd09502
    Location:478 → 547
    SAM_SARM1-like_repeat2; SAM domain of SARM1-like, repeat 2
    smart00255
    Location:561 → 702
    TIR; Toll - interleukin 1 - resistance
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials