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1700125H20Rik RIKEN cDNA 1700125H20 gene [ Mus musculus (house mouse) ]

Gene ID: 73634, updated on 31-Jan-2019

Summary

Official Symbol
1700125H20Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700125H20 geneprovided by MGI
Primary source
MGI:MGI:1920884
See related
Ensembl:ENSMUSG00000018479
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in testis adult (RPKM 2.2) and adrenal adult (RPKM 0.2) See more
Orthologs

Genomic context

See 1700125H20Rik in Genome Data Viewer
Location:
11; 11 C
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 11 NC_000077.6 (85140088..85182799)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (84984598..84994656)

Chromosome 11 - NC_000077.6Genomic Context describing neighboring genes Neighboring gene ubiquitin specific peptidase 32 Neighboring gene 60S ribosomal protein L18 pseudogene Neighboring gene ribosomal protein L13, pseudogene 1 Neighboring gene ribosomal protein L13 pseudogene Neighboring gene amyloid beta precursor protein (cytoplasmic tail) binding protein 2 Neighboring gene predicted gene, 38935 Neighboring gene akirin 1, pseudogene Neighboring gene amyloid beta precursor protein (cytoplasmic tail) binding protein 2, opposite strand

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein C17orf64 homolog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_028589.1NP_082865.1  uncharacterized protein C17orf64 homolog

    See identical proteins and their annotated locations for NP_082865.1

    Status: VALIDATED

    Source sequence(s)
    BB019433, BC048674
    Consensus CDS
    CCDS48872.1
    UniProtKB/Swiss-Prot
    Q9D979
    Related
    ENSMUSP00000018623.3, ENSMUST00000018623.3
    Conserved Domains (1) summary
    pfam13907
    Location:50132
    DUF4208; Domain of unknown function (DUF4208)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000077.6 Reference GRCm38.p4 C57BL/6J

    Range
    85140088..85182799
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006534343.3XP_006534406.1  uncharacterized protein C17orf64 homolog isoform X5

    See identical proteins and their annotated locations for XP_006534406.1

    Conserved Domains (1) summary
    pfam13907
    Location:46126
    DUF4208; Domain of unknown function (DUF4208)
  2. XM_011249281.2XP_011247583.1  uncharacterized protein C17orf64 homolog isoform X5

    See identical proteins and their annotated locations for XP_011247583.1

    Conserved Domains (1) summary
    pfam13907
    Location:46126
    DUF4208; Domain of unknown function (DUF4208)
  3. XM_006534344.3XP_006534407.1  uncharacterized protein C17orf64 homolog isoform X6

    See identical proteins and their annotated locations for XP_006534407.1

    UniProtKB/Swiss-Prot
    Q9D979
    Related
    ENSMUSP00000098248.1, ENSMUST00000100681.7
    Conserved Domains (1) summary
    pfam13907
    Location:123
    DUF4208; Domain of unknown function (DUF4208)
  4. XM_006534339.3XP_006534402.1  uncharacterized protein C17orf64 homolog isoform X1

    Conserved Domains (1) summary
    pfam13907
    Location:82162
    DUF4208; Domain of unknown function (DUF4208)
  5. XM_006534340.3XP_006534403.1  uncharacterized protein C17orf64 homolog isoform X2

    Conserved Domains (1) summary
    pfam13907
    Location:71153
    DUF4208; Domain of unknown function (DUF4208)
  6. XM_006534341.3XP_006534404.1  uncharacterized protein C17orf64 homolog isoform X3

    Conserved Domains (1) summary
    pfam13907
    Location:82162
    DUF4208; Domain of unknown function (DUF4208)
  7. XM_006534342.3XP_006534405.1  uncharacterized protein C17orf64 homolog isoform X4

    Conserved Domains (1) summary
    pfam13907
    Location:61141
    DUF4208; Domain of unknown function (DUF4208)
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