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noct.S nocturnin S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 734309, updated on 8-Apr-2017

Summary

Symbol
noct.S
Full Name
nocturnin S homeolog
Primary source
Xenbase:XB-GENE-1014547
Locus tag
XELAEV_18009292mg
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
noc; noct; ccr4l; ccrn4l; ccrn4l-b
Annotation information
Annotation category: partial on reference assembly

Genomic context

See noct.S in Genome Data Viewer
Location:
chromosome: 1S
Exon count:
3
Annotation release Status Assembly Chr Location
100 current Xenopus_laevis_v2 (GCF_001663975.1) 1S NC_030725.1 (49310461..49335822)

Chromosome 1S - NC_030725.1Genomic Context describing neighboring genes Neighboring gene malate synthase, glyoxysomal-like Neighboring gene N(alpha)-acetyltransferase 15, NatA auxiliary subunit S homeolog Neighboring gene ETS-related transcription factor Elf-2-like Neighboring gene uncharacterized LOC108706682 Neighboring gene protein MGARP-like

Genomic regions, transcripts, and products

Genomic Sequence:
NC_030725.1 Chromosome 1S Reference Xenopus_laevis_v2 Primary Assembly

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
nocturnin S homeolog
Names
CCR4 carbon catabolite repression 4-like
NP_001089262.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095793.1NP_001089262.1  nocturnin S homeolog

    See identical proteins and their annotated locations for NP_001089262.1

    Status: PROVISIONAL

    Source sequence(s)
    BC089295
    UniProtKB/TrEMBL
    Q5FWL2
    Conserved Domains (1) summary
    cd09096
    Location:172451
    Deadenylase_nocturnin; C-terminal deadenylase domain of nocturnin and related domains

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v2 Primary Assembly

Genomic

  1. NC_030725.1 Reference Xenopus_laevis_v2 Primary Assembly

    Range
    49310461..49335822
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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