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1700034J05Rik RIKEN cDNA 1700034J05 gene [ Mus musculus (house mouse) ]

Gene ID: 73344, updated on 31-Jan-2019

Summary

Official Symbol
1700034J05Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700034J05 geneprovided by MGI
Primary source
MGI:MGI:1920594
See related
Ensembl:ENSMUSG00000040163
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Restricted expression toward testis adult (RPKM 40.0) See more
Orthologs

Genomic context

See 1700034J05Rik in Genome Data Viewer
Location:
6; 6 G3
Exon count:
4
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 6 NC_000072.6 (146951301..146956297, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (146899823..146902943, complement)

Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene aryl hydrocarbon receptor nuclear translocator-like 2 Neighboring gene single-pass membrane protein with coiled-coil domains 2 Neighboring gene PTPRF interacting protein, binding protein 1 (liprin beta 1) Neighboring gene predicted gene, 35876 Neighboring gene RAB15 effector protein

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein C12orf71 homolog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001164236.1NP_001157708.1  uncharacterized protein C12orf71 homolog isoform 2

    See identical proteins and their annotated locations for NP_001157708.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice site, compared to variant 1. The resulting isoform (2) lacks one internal residue, compared to isoform 1.
    Source sequence(s)
    AK076643, BB573720, BC052362
    Consensus CDS
    CCDS51956.1
    UniProtKB/Swiss-Prot
    Q80W69
    Related
    ENSMUSP00000107249.1, ENSMUST00000111622.1
    Conserved Domains (1) summary
    pfam15480
    Location:26294
    DUF4640; Domain of unknown function (DUF4640)
  2. NM_028509.1NP_082785.1  uncharacterized protein C12orf71 homolog isoform 1

    See identical proteins and their annotated locations for NP_082785.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    BB573720, BC052362
    Consensus CDS
    CCDS51957.1
    UniProtKB/Swiss-Prot
    Q80W69
    Related
    ENSMUSP00000043802.8, ENSMUST00000036592.14
    Conserved Domains (1) summary
    pfam15480
    Location:26295
    DUF4640; Domain of unknown function (DUF4640)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000072.6 Reference GRCm38.p4 C57BL/6J

    Range
    146951301..146956297 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006507112.3XP_006507175.1  uncharacterized protein C12orf71 homolog isoform X4

    See identical proteins and their annotated locations for XP_006507175.1

    UniProtKB/Swiss-Prot
    Q80W69
    Conserved Domains (1) summary
    pfam15480
    Location:26295
    DUF4640; Domain of unknown function (DUF4640)
  2. XM_017321776.1XP_017177265.1  uncharacterized protein C12orf71 homolog isoform X4

    UniProtKB/Swiss-Prot
    Q80W69
    Conserved Domains (1) summary
    pfam15480
    Location:26295
    DUF4640; Domain of unknown function (DUF4640)
  3. XM_011241632.2XP_011239934.1  uncharacterized protein C12orf71 homolog isoform X4

    See identical proteins and their annotated locations for XP_011239934.1

    UniProtKB/Swiss-Prot
    Q80W69
    Conserved Domains (1) summary
    pfam15480
    Location:26295
    DUF4640; Domain of unknown function (DUF4640)
  4. XM_017321777.1XP_017177266.1  uncharacterized protein C12orf71 homolog isoform X5

  5. XM_017321775.1XP_017177264.1  uncharacterized protein C12orf71 homolog isoform X3

  6. XM_017321774.1XP_017177263.1  uncharacterized protein C12orf71 homolog isoform X2

  7. XM_017321773.1XP_017177262.1  uncharacterized protein C12orf71 homolog isoform X1

Reference GRCm38.p4 NOD/ShiLtJ

Genomic

  1. NT_166305.2 Reference GRCm38.p4 NOD/ShiLtJ

    Range
    3444883..3448002 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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