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Cabcoco1 ciliary associated calcium binding coiled-coil 1 [ Mus musculus (house mouse) ]

Gene ID: 73287, updated on 21-Feb-2019

Summary

Official Symbol
Cabcoco1provided by MGI
Official Full Name
ciliary associated calcium binding coiled-coil 1provided by MGI
Primary source
MGI:MGI:1920537
See related
Ensembl:ENSMUSG00000019945
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700040L02Rik
Expression
Biased expression in testis adult (RPKM 5.1), kidney adult (RPKM 1.0) and 2 other tissues See more
Orthologs

Genomic context

See Cabcoco1 in Genome Data Viewer
Location:
10; 10 B5.2
Exon count:
9
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 10 NC_000076.6 (68430956..68541924, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (67893704..68004623, complement)

Chromosome 10 - NC_000076.6Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930545H06 gene Neighboring gene predicted gene, 32748 Neighboring gene predicted gene, 40683 Neighboring gene predicted gene, 32872 Neighboring gene enolase 2, gamma neuronal pseudogene Neighboring gene transmembrane protein 26

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
calcium ion binding IDA
Inferred from Direct Assay
more info
PubMed 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cell projection IEA
Inferred from Electronic Annotation
more info
 
centrosome IDA
Inferred from Direct Assay
more info
PubMed 
cilium IEA
Inferred from Electronic Annotation
more info
 
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
motile cilium IEA
Inferred from Electronic Annotation
more info
 
sperm flagellum IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
ciliary-associated calcium-binding coiled-coil protein 1; uncharacterized protein C10orf107 homolog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_028491.1NP_082767.1  ciliary-associated calcium-binding coiled-coil protein 1

    See identical proteins and their annotated locations for NP_082767.1

    Status: VALIDATED

    Source sequence(s)
    AK029622
    Consensus CDS
    CCDS23905.1
    UniProtKB/Swiss-Prot
    Q8CDT7
    UniProtKB/TrEMBL
    A0A0R4J010
    Related
    ENSMUSP00000020103.2, ENSMUST00000020103.8
    Conserved Domains (1) summary
    pfam14769
    Location:93188
    CLAMP; Flagellar C1a complex subunit C1a-32

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000076.6 Reference GRCm38.p4 C57BL/6J

    Range
    68430956..68541924 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006514216.3XP_006514279.1  uncharacterized protein C10orf107 homolog isoform X1

    Conserved Domains (1) summary
    pfam14769
    Location:93188
    CLAMP; Flagellar C1a complex subunit C1a-32
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