U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

TDRG1 testis development related 1 [ Homo sapiens (human) ]

Gene ID: 732253, updated on 14-Aug-2022

Summary

Official Symbol
TDRG1provided by HGNC
Official Full Name
testis development related 1provided by HGNC
Primary source
HGNC:HGNC:43642
See related
Ensembl:ENSG00000204091 MIM:615676; AllianceGenome:HGNC:43642
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC00532; lincRNA-NR_024015
Summary
Predicted to be located in cytoplasm. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis (RPKM 38.5) See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See TDRG1 in Genome Data Viewer
Location:
6p21.2
Exon count:
2
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (40378337..40379893)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (40206234..40207790)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (40346076..40347632)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 951 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr6:40327493-40328118 Neighboring gene leucine rich repeat and fibronectin type III domain containing 2 Neighboring gene RNA, U6 small nuclear 250, pseudogene Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:40387157-40387792

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Homology

Other Names

  • long intergenic non-protein coding RNA 532
  • testis development related 1 (non-protein coding)
  • testis development related gene 1
  • testis development related protein 1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_160958.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL591063
    Related
    ENST00000373170.2
  2. NR_160959.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL591063
    Related
    ENST00000653048.1
  3. NR_160960.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL591063
    Related
    ENST00000448433.6

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    40378337..40379893
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    40206234..40207790
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001359094.1: Suppressed sequence

    Description
    NM_001359094.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
  2. NM_001359095.1: Suppressed sequence

    Description
    NM_001359095.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
  3. NM_001359096.1: Suppressed sequence

    Description
    NM_001359096.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.