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3110082I17Rik RIKEN cDNA 3110082I17 gene [ Mus musculus (house mouse) ]

Gene ID: 73212, updated on 27-Jan-2018

Summary

Official Symbol
3110082I17Rikprovided by MGI
Official Full Name
RIKEN cDNA 3110082I17 geneprovided by MGI
Primary source
MGI:MGI:1920462
See related
Ensembl:ENSMUSG00000053553 Vega:OTTMUSG00000035852
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AW411904
Expression
Ubiquitous expression in CNS E11.5 (RPKM 8.4), limb E14.5 (RPKM 5.9) and 28 other tissues See more
Orthologs

Genomic context

See 3110082I17Rik in Genome Data Viewer
Location:
5; 5 G2
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (139359739..139460534, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (139835693..139936488, complement)

Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108169077 Neighboring gene cytochrome c oxidase assembly protein 19 Neighboring gene cytochrome P450, family 2, subfamily w, polypeptide 1 Neighboring gene microRNA 339 Neighboring gene G protein-coupled receptor 146 Neighboring gene G protein-coupled receptor 146 Neighboring gene RIKEN cDNA C130050O18 gene Neighboring gene G protein-coupled estrogen receptor 1 Neighboring gene zinc finger, AN1-type domain 2A Neighboring gene RIKEN cDNA 4930500L23 gene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein C7orf50 homolog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_028469.3NP_082745.2  uncharacterized protein C7orf50 homolog

    See identical proteins and their annotated locations for NP_082745.2

    Status: VALIDATED

    Source sequence(s)
    AV470085, BC058580, BU562762
    Consensus CDS
    CCDS51684.1
    UniProtKB/Swiss-Prot
    Q9CXL3
    Related
    ENSMUSP00000069230.7, OTTMUSP00000050643, ENSMUST00000066052.11, OTTMUST00000091859
    Conserved Domains (1) summary
    pfam10180
    Location:103164
    DUF2373; uncharacterized conserved protein (DUF2373)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

    Range
    139359739..139460534 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006504738.3XP_006504801.1  uncharacterized protein C7orf50 homolog isoform X1

    Conserved Domains (1) summary
    pfam10180
    Location:62123
    DUF2373; uncharacterized conserved protein (DUF2373)
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