U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

3110082I17Rik RIKEN cDNA 3110082I17 gene [ Mus musculus (house mouse) ]

Gene ID: 73212, updated on 18-Apr-2024

Summary

Official Symbol
3110082I17Rikprovided by MGI
Official Full Name
RIKEN cDNA 3110082I17 geneprovided by MGI
Primary source
MGI:MGI:1920462
See related
Ensembl:ENSMUSG00000053553 AllianceGenome:MGI:1920462
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Is expressed in several structures, including adrenal gland; brain; genitourinary system; gut gland; and trachea. Orthologous to human C7orf50 (chromosome 7 open reading frame 50). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E11.5 (RPKM 8.4), limb E14.5 (RPKM 5.9) and 28 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Location:
5 G2; 5 78.45 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (139345494..139446291, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (139359739..139460534, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E6390 Neighboring gene cytochrome c oxidase assembly protein 19 Neighboring gene cytochrome P450, family 2, subfamily w, polypeptide 1 Neighboring gene STARR-positive B cell enhancer ABC_E9657 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:139858915-139859024 Neighboring gene microRNA 339 Neighboring gene G protein-coupled receptor 146 Neighboring gene RIKEN cDNA C130050O18 gene Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:139894778-139894979 Neighboring gene G protein-coupled estrogen receptor 1 Neighboring gene predicted gene, 26285 Neighboring gene STARR-positive B cell enhancer ABC_E1315 Neighboring gene STARR-seq mESC enhancer starr_14695 Neighboring gene STARR-positive B cell enhancer ABC_E437 Neighboring gene zinc finger, AN1-type domain 2A Neighboring gene RIKEN cDNA 4930500L23 gene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 
  • Targeted (2) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein C7orf50 homolog

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001420180.1NP_001407109.1  uncharacterized protein C7orf50 homolog isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC140216, AC161058
  2. NM_028469.4NP_082745.2  uncharacterized protein C7orf50 homolog isoform 1

    See identical proteins and their annotated locations for NP_082745.2

    Status: VALIDATED

    Source sequence(s)
    AC140216, AC161058
    Consensus CDS
    CCDS51684.1
    UniProtKB/Swiss-Prot
    G5E8F7, Q6PDQ0, Q9CXL3
    Related
    ENSMUSP00000069230.8, ENSMUST00000066052.12
    Conserved Domains (1) summary
    pfam10180
    Location:103164
    DUF2373; uncharacterized conserved protein (DUF2373)

RNA

  1. NR_185148.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC161058

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    139345494..139446291 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)