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3110082I17Rik RIKEN cDNA 3110082I17 gene [ Mus musculus (house mouse) ]

Gene ID: 73212, updated on 26-Sep-2022

Summary

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Official Symbol
3110082I17Rikprovided by MGI
Official Full Name
RIKEN cDNA 3110082I17 geneprovided by MGI
Primary source
MGI:MGI:1920462
See related
Ensembl:ENSMUSG00000053553 AllianceGenome:MGI:1920462
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Is expressed in several structures, including adrenal gland; brain; genitourinary system; gut gland; and trachea. Orthologous to human C7orf50 (chromosome 7 open reading frame 50). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E11.5 (RPKM 8.4), limb E14.5 (RPKM 5.9) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See 3110082I17Rik in Genome Data Viewer
Location:
5; 5 G2
Exon count:
6
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (139345494..139446289, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (139359739..139460534, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase assembly protein 19 Neighboring gene cytochrome P450, family 2, subfamily w, polypeptide 1 Neighboring gene uncharacterized LOC118568760 Neighboring gene microRNA 339 Neighboring gene G protein-coupled receptor 146 Neighboring gene RIKEN cDNA C130050O18 gene Neighboring gene G protein-coupled estrogen receptor 1 Neighboring gene predicted gene, 26285 Neighboring gene zinc finger, AN1-type domain 2A Neighboring gene RIKEN cDNA 4930500L23 gene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Identification and developmental analysis of genes expressed by dopaminergic neurons of the substantia nigra pars compacta. Thuret S, et al. Mol Cell Neurosci, 2004 Mar. PMID 15033168
  2. Cdh1-APC Regulates Protein Synthesis and Stress Granules in Neurons through an FMRP-Dependent Mechanism. Valdez-Sinon AN, et al. iScience, 2020 May 22. PMID 32434143, Free PMC Article
  3. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article
  4. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
  5. BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain. Pourhaghighi R, et al. Cell Syst, 2020 Apr 22. PMID 32325033, Free PMC Article

See all (17) citations in PubMed

See citations in PubMed for homologs of this gene provided by HomoloGene

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C7orf50 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_028469.3 → NP_082745.2  uncharacterized protein C7orf50 homolog

    See identical proteins and their annotated locations for NP_082745.2

    Status: VALIDATED

    Source sequence(s)
    AV470085, BC058580, BU562762
    Consensus CDS
    CCDS51684.1
    UniProtKB/Swiss-Prot
    Q6PDQ0, Q9CXL3
    Related
    ENSMUSP00000069230.8, ENSMUST00000066052.12
    Conserved Domains (1) summary
    pfam10180
    Location:103 → 164
    DUF2373; uncharacterized conserved protein (DUF2373)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    139345494..139446289 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006504738.5 → XP_006504801.1  uncharacterized protein C7orf50 homolog isoform X1

    Conserved Domains (1) summary
    pfam10180
    Location:62 → 123
    DUF2373; Uncharacterized conserved protein (DUF2373)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9CXL3.3 GenPept UniProtKB/Swiss-Prot:Q9CXL3

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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