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LINC01348 long intergenic non-protein coding RNA 1348 [ Homo sapiens (human) ]

Gene ID: 731656, updated on 19-Jul-2022

Summary

Official Symbol
LINC01348provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1348provided by HGNC
Primary source
HGNC:HGNC:50567
See related
Ensembl:ENSG00000280587 AllianceGenome:HGNC:50567
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in liver (RPKM 18.2) and duodenum (RPKM 1.2) See more
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Genomic context

See LINC01348 in Genome Data Viewer
Location:
1q42.3
Exon count:
4
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (235065474..235069818, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (234456512..234460856, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 (PATCHES) NW_004070865.1 (34180..38524, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 4658 Neighboring gene Sharpr-MPRA regulatory region 5019 Neighboring gene translocase of outer mitochondrial membrane 20 Neighboring gene uncharacterized LOC105379283 Neighboring gene small nucleolar RNA, H/ACA box 14B Neighboring gene RNA binding motif protein 34

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027454.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA345641, AV652367, AV719684, BX100191, DA457760, DB348942, W90538
    Related
    ENST00000687678.2

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    235065474..235069818 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    234456512..234460856 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)