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Slc22a23 solute carrier family 22, member 23 [ Mus musculus (house mouse) ]

Gene ID: 73102, updated on 9-Dec-2024

Summary

Official Symbol
Slc22a23provided by MGI
Official Full Name
solute carrier family 22, member 23provided by MGI
Primary source
MGI:MGI:1920352
See related
Ensembl:ENSMUSG00000038267 AllianceGenome:MGI:1920352
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
3110004L20Rik
Summary
Predicted to enable transmembrane transporter activity. Predicted to be involved in monoatomic ion transport and transmembrane transport. Predicted to be located in membrane. Is expressed in blood vessel; branchial arch; embryo; heart; and outflow tract. Orthologous to human SLC22A23 (solute carrier family 22 member 23). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Ubiquitous expression in colon adult (RPKM 22.2), kidney adult (RPKM 17.9) and 27 other tissues See more
Orthologs
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Genomic context

See Slc22a23 in Genome Data Viewer
Location:
13 A3.3; 13 14.05 cM
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (34363141..34530666, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (34179158..34345275, complement)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene VISTA enhancer mm1605 Neighboring gene STARR-seq mESC enhancer starr_34140 Neighboring gene STARR-seq mESC enhancer starr_34143 Neighboring gene predicted gene, 36549 Neighboring gene STARR-seq mESC enhancer starr_34144 Neighboring gene proteasome (prosome, macropain) assembly chaperone 4 Neighboring gene STARR-seq mESC enhancer starr_34145 Neighboring gene STARR-seq mESC enhancer starr_34148 Neighboring gene VISTA enhancer mm1307 Neighboring gene predicted gene, 53791 Neighboring gene predicted gene 6129

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
solute carrier family 22 member 23

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033167.3NP_001028339.1  solute carrier family 22 member 23 isoform 1

    See identical proteins and their annotated locations for NP_001028339.1

    Status: VALIDATED

    Source sequence(s)
    AC102087, AC129019, AC139242
    Consensus CDS
    CCDS26446.1
    UniProtKB/Swiss-Prot
    Q3UHH2, Q7TPT5
    UniProtKB/TrEMBL
    F7BP73
    Related
    ENSMUSP00000042742.6, ENSMUST00000040336.12
    Conserved Domains (2) summary
    cd06174
    Location:230359
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
    TIGR00898
    Location:98631
    2A0119; cation transport protein
  2. NM_001382849.1NP_001369778.1  solute carrier family 22 member 23 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC102087, AC129019, AC139242
    UniProtKB/TrEMBL
    F7BP73
    Related
    ENSMUSP00000122283.2, ENSMUST00000148390.3
    Conserved Domains (1) summary
    cd17444
    Location:187600
    MFS_SLC22A23; Solute carrier family 22, member 23 of the Major Facilitator Superfamily

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    34363141..34530666 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030247433.1XP_030103293.1  solute carrier family 22 member 23 isoform X1

    Conserved Domains (1) summary
    cl28910
    Location:134485
    MFS; Major Facilitator Superfamily
  2. XM_030247434.2XP_030103294.1  solute carrier family 22 member 23 isoform X3

    Conserved Domains (1) summary
    cl28910
    Location:1287
    MFS; Major Facilitator Superfamily
  3. XM_036158192.1XP_036014085.1  solute carrier family 22 member 23 isoform X2

    Conserved Domains (1) summary
    cl28910
    Location:187359
    MFS; Major Facilitator Superfamily

RNA

  1. XR_004938073.1 RNA Sequence