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Ttc9b tetratricopeptide repeat domain 9B [ Mus musculus (house mouse) ]

Gene ID: 73032, updated on 5-Mar-2024

Summary

Official Symbol
Ttc9bprovided by MGI
Official Full Name
tetratricopeptide repeat domain 9Bprovided by MGI
Primary source
MGI:MGI:1920282
See related
Ensembl:ENSMUSG00000007944 AllianceGenome:MGI:1920282
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2900074C18Rik
Summary
Is expressed in several structures, including brain; ganglia; neural retina; and olfactory epithelium. Orthologous to human TTC9B (tetratricopeptide repeat domain 9B). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in cortex adult (RPKM 102.2), frontal lobe adult (RPKM 80.2) and 4 other tissues See more
Orthologs
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Genomic context

See Ttc9b in Genome Data Viewer
Location:
7 A3; 7 15.95 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (27353349..27355632)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (27653924..27656207)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E6525 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:28376489-28376676 Neighboring gene STARR-positive B cell enhancer ABC_E11346 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:28377425-28377608 Neighboring gene ribosomal protein L17 pseudogene Neighboring gene thymoma viral proto-oncogene 2 Neighboring gene STARR-seq mESC enhancer starr_18379 Neighboring gene predicted gene, 38973 Neighboring gene mitogen-activated protein kinase kinase kinase 10 Neighboring gene STARR-seq mESC enhancer starr_18383 Neighboring gene zinc finger protein 607B Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:28474189-28474376 Neighboring gene STARR-seq mESC enhancer starr_18384

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Clone Names

  • MGC107339

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
tetratricopeptide repeat protein 9B
Names
TPR repeat protein 9B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_028417.1NP_082693.1  tetratricopeptide repeat protein 9B

    See identical proteins and their annotated locations for NP_082693.1

    Status: PROVISIONAL

    Source sequence(s)
    BC089566
    Consensus CDS
    CCDS21028.1
    UniProtKB/Swiss-Prot
    Q8BYN8, Q9D6E4
    Related
    ENSMUSP00000008088.8, ENSMUST00000008088.9
    Conserved Domains (2) summary
    sd00006
    Location:133163
    TPR; TPR repeat [structural motif]
    cl26002
    Location:150218
    TPR_11; TPR repeat

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    27353349..27355632
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)