Format

Send to:

Choose Destination

LOC730100 uncharacterized LOC730100 [ Homo sapiens (human) ]

Gene ID: 730100, updated on 23-Nov-2021

Summary

Gene symbol
LOC730100
Gene description
uncharacterized LOC730100
See related
Ensembl:ENSG00000231918
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See LOC730100 in Genome Data Viewer
Location:
2p16.3
Exon count:
11
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (51032601..52407917)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (51259739..52635055)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene neurexin 1 Neighboring gene uncharacterized LOC101927089 Neighboring gene microRNA 8485 Neighboring gene uncharacterized LOC105377627 Neighboring gene lysine rich nucleolar protein 1 pseudogene 3 Neighboring gene uncharacterized LOC105374597 Neighboring gene crystallin gamma G, pseudogene Neighboring gene CCDC12 pseudogene 1 Neighboring gene uncharacterized LOC107985766 Neighboring gene zinc finger protein 863, pseudogene Neighboring gene long intergenic non-protein coding RNA 1867 Neighboring gene GGCT pseudogene 3 Neighboring gene CRTC1 pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.
EBI GWAS Catalog
Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.
EBI GWAS Catalog
Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.
EBI GWAS Catalog
TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.
EBI GWAS Catalog

General gene information

Markers

Clone Names

  • AC007682.1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135237.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007402, AC064868, AC087073, AC139712, AK127244
    Related
    ENST00000440698.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    51032601..52407917
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center