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RRN3P1 RRN3 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 730092, updated on 2-Nov-2024

Summary

Official Symbol
RRN3P1provided by HGNC
Official Full Name
RRN3 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:30548
See related
Ensembl:ENSG00000291066 AllianceGenome:HGNC:30548
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to enable RNA polymerase I general transcription initiation factor activity. Predicted to be involved in transcription initiation at RNA polymerase I promoter. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in thyroid (RPKM 9.2), lymph node (RPKM 8.6) and 25 other tissues See more
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Genomic context

See RRN3P1 in Genome Data Viewer
Location:
16p12.2
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (21796630..21819174, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (22397770..22420314)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (21807951..21830495, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene otoancorin Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10560 Neighboring gene uncharacterized LOC105371126 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:21801669-21802169 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:21830990-21831795 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:21831796-21832600 Neighboring gene uncharacterized LOC112268174 Neighboring gene nuclear pore complex interacting protein family member B4 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:21875652-21876336 Neighboring gene small nucleolar RNA U13 Neighboring gene SMG1 pseudogene 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • RNA polymerase I transcription factor homolog pseudogene 1
  • RRN3 RNA polymerase I transcription factor homolog pseudogene
  • RRN3 homolog, RNA polymerase I transcription factor pseudogene 1

Clone Names

  • FLJ77916, FLJ99542, MGC138320, MGC138322

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables RNA polymerase I general transcription initiation factor activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in transcription initiation at RNA polymerase I promoter IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003370.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL702574, BC006441, BX101439, CN397262
    Related
    ENST00000786217.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    21796630..21819174 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_017852933.1 Reference GRCh38.p14 PATCHES

    Range
    1285606..1308150
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    22397770..22420314
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)